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1PL3
Biol. Unit 1
Info
Asym.Unit (75 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (36 KB)
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(1)
Title
:
CYTOCHROME DOMAIN OF CELLOBIOSE DEHYDROGENASE, M65H MUTANT
Authors
:
F. A. J. Rotsaert, B. M. Hallberg, S. De Vries, P. Moenne-Loccoz, C. Div M. H. Gold
Date
:
06 Jun 03 (Deposition) - 01 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
B-Type Cytochrome, Mutant, Bis-His Ligation, Beta Sandwich, Fe(Ii)- Protoporphyrin Ix, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
F. A. J. Rotsaert, B. M. Hallberg, S. De Vries, P. Moenne-Loccoz, C. Divne, V. Renganathan, M. H. Gold
Biophysical And Structural Analysis Of A Novel Heme B Iron Ligation In The Flavocytochrome Cellobiose Dehydrogenase.
J. Biol. Chem. V. 278 33224 2003
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHO... (1PGa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: PYROGLUTAMIC ACID (PCAa)
5b: PYROGLUTAMIC ACID (PCAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PG
1
Ligand/Ion
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2
CD
-1
Ligand/Ion
CADMIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PCA
1
Mod. Amino Acid
PYROGLUTAMIC ACID
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:111 , SER A:112 , THR A:113 , NAG A:302 , HOH A:756 , HOH A:763 , HOH A:781 , GLN B:40 , THR B:136 , HOH B:1770
BINDING SITE FOR RESIDUE NAG A 301
02
AC2
SOFTWARE
PRO A:9 , NAG A:301 , HOH A:747
BINDING SITE FOR RESIDUE NAG A 302
03
AC5
SOFTWARE
PRO A:21 , ASP A:24 , HOH A:629 , HEM B:401 , HOH B:628
BINDING SITE FOR RESIDUE CD A 502
04
AC6
SOFTWARE
GLU A:107 , TYR A:184 , ASN A:186 , HOH A:721 , HOH A:779
BINDING SITE FOR RESIDUE CD A 503
05
AC7
SOFTWARE
GLU A:126
BINDING SITE FOR RESIDUE CD A 504
06
AC8
SOFTWARE
HEM A:401 , HOH A:1628 , PRO B:21 , ASP B:24 , HOH B:1629
BINDING SITE FOR RESIDUE CD B 1502
07
BC1
SOFTWARE
ASP A:165 , HOH A:627 , ASP B:165 , HOH B:1627
BINDING SITE FOR RESIDUE CD A 501
08
BC2
SOFTWARE
TRP A:56 , GLY A:58 , ILE A:59 , ALA A:64 , HIS A:65 , TYR A:90 , GLN A:92 , PRO A:93 , ALA A:142 , PHE A:160 , GLU A:162 , HIS A:163 , PHE A:166 , PHE A:168 , HOH A:605 , HOH A:633 , PRO B:21 , ASP B:24 , CD B:1502 , HOH B:1629 , HOH B:1637
BINDING SITE FOR RESIDUE HEM A 401
09
BC3
SOFTWARE
PRO A:21 , ASP A:24 , CD A:502 , HOH A:629 , HOH A:637 , GLY B:58 , ILE B:59 , HIS B:65 , TYR B:90 , GLN B:92 , ALA B:142 , PHE B:160 , GLU B:162 , HIS B:163 , PHE B:166 , HOH B:1605 , HOH B:1633
BINDING SITE FOR RESIDUE HEM B 401
10
BC4
SOFTWARE
PCA A:1 , HOH A:665 , PCA B:1 , HOH B:1665
BINDING SITE FOR RESIDUE 1PG A 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pl3a_ (A:)
1b: SCOP_d1pl3b_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
CBD9-like
(9)
Family
:
Cytochrome domain of cellobiose dehydrogenase
(4)
Protein domain
:
Cytochrome domain of cellobiose dehydrogenase
(4)
Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
(4)
1a
d1pl3a_
A:
1b
d1pl3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pl3A00 (A:2-186)
1b: CATH_1pl3B00 (B:2-186)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1210, no name defined]
(4)
Phanerochaete chrysosporium. Organism_taxid: 5306.
(4)
1a
1pl3A00
A:2-186
1b
1pl3B00
B:2-186
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (75 KB)
Header - Asym.Unit
Biol.Unit 1 (37 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
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