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1PKQ
Biol. Unit 1
Info
Asym.Unit (181 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
MYELIN OLIGODENDROCYTE GLYCOPROTEIN-(8-18C5) FAB-COMPLEX
Authors
:
C. Breithaupt, A. Schubart, H. Zander, A. Skerra, R. Huber, C. Linington, U. Jacob
Date
:
06 Jun 03 (Deposition) - 15 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,E,F,G,J
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: F,G,J (1x)
Keywords
:
Autoantibody, Multiple Sclerosis, Eae, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Breithaupt, A. Schubart, H. Zander, A. Skerra, R. Huber, C. Linington, U. Jacob
Structural Insights Into The Antigenicity Of Myelin Oligodendrocyte Glycoprotein
Proc. Natl. Acad. Sci. Usa V. 100 9446 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(5, 10)
Info
All SCOP Domains
1a: SCOP_d1pkqb2 (B:114-216)
1b: SCOP_d1pkqg2 (G:114-213)
2a: SCOP_d1pkqa2 (A:108-213)
2b: SCOP_d1pkqf2 (F:108-210)
3a: SCOP_d1pkqb1 (B:1-113)
3b: SCOP_d1pkqg1 (G:1-113)
4a: SCOP_d1pkqa1 (A:1-107)
4b: SCOP_d1pkqf1 (F:1-107)
5a: SCOP_d1pkqe_ (E:)
5b: SCOP_d1pkqj_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1pkqb2
B:114-216
1b
d1pkqg2
G:114-213
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1pkqa2
A:108-213
2b
d1pkqf2
F:108-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1pkqb1
B:1-113
3b
d1pkqg1
G:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
(46)
4a
d1pkqa1
A:1-107
4b
d1pkqf1
F:1-107
Protein domain
:
Myelin oligodendrocyte glycoprotein (MOG)
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
5a
d1pkqe_
E:
5b
d1pkqj_
J:
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1pkqA02 (A:109-211)
1b: CATH_1pkqB02 (B:114-213)
1c: CATH_1pkqG02 (G:114-212)
1d: CATH_1pkqA01 (A:1-108)
1e: CATH_1pkqF01 (F:1-108)
1f: CATH_1pkqJ00 (J:1-118)
1g: CATH_1pkqE00 (E:1A-119)
1h: CATH_1pkqF02 (F:109-210)
1i: CATH_1pkqB01 (B:1-113)
1j: CATH_1pkqG01 (G:1-113)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1pkqA02
A:109-211
1b
1pkqB02
B:114-213
1c
1pkqG02
G:114-212
1d
1pkqA01
A:1-108
1e
1pkqF01
F:1-108
1f
1pkqJ00
J:1-118
1g
1pkqE00
E:1A-119
1h
1pkqF02
F:109-210
1i
1pkqB01
B:1-113
1j
1pkqG01
G:1-113
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_V_set_1pkqJ01 (J:2-115)
1b: PFAM_V_set_1pkqJ02 (J:2-115)
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Clan
:
Ig
(577)
Family
:
V-set
(144)
Rattus norvegicus (Rat)
(4)
1a
V-set-1pkqJ01
J:2-115
1b
V-set-1pkqJ02
J:2-115
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Show PDB file:
Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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