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1PK2
Asym. Unit
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Asym.Unit (26 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE TISSUE-TYPE PLASMINOGEN ACTIVATOR KRINGLE 2 DOMAIN COMPLEXED TO 6-AMINOHEXANOIC ACID AN ANTIFIBRINOLYTIC DRUG
Authors
:
M. Llinas, I. -J. L. Byeon
Date
:
16 Sep 91 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Plasminogen Activator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. J. Byeon, M. Llinas
Solution Structure Of The Tissue-Type Plasminogen Activator Kringle 2 Domain Complexed To 6-Aminohexanoic Acid An Antifibrinolytic Drug.
J. Mol. Biol. V. 222 1035 1991
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 6-AMINOHEXANOIC ACID (ACAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACA
1
Ligand/Ion
6-AMINOHEXANOIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:63 , TRP A:69 , HIS A:71 , LEU A:78 , THR A:79 , TRP A:80
BINDING SITE FOR RESIDUE ACA A 91
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_2 (-|A:6-88)
2: KRINGLE_1 (-|A:58-70)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_2
PS50070
Kringle domain profile.
TPA_HUMAN
126-208
214-296
1
-
A:6-88
2
KRINGLE_1
PS00021
Kringle domain signature.
TPA_HUMAN
178-190
266-278
1
-
A:58-70
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Exons
(4, 4)
Info
All Exons
Exon 1.9f (A:1-3)
Exon 1.10a (A:3-60)
Exon 1.11 (A:60-89)
Exon 1.12b (A:89-90)
View:
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All Exon Boundaries
1: Boundary 1.9d/1.9f
2: Boundary 1.9f/1.10a
3: Boundary 1.10a/1.11
4: Boundary 1.11/1.12b
5: Boundary 1.12b/1.13b
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000220809
1a
ENSE00002112956
chr8:
42065242-42065012
231
TPA_HUMAN
-
0
0
-
-
1.5
ENST00000220809
5
ENSE00002181240
chr8:
42050729-42050632
98
TPA_HUMAN
1-24
24
0
-
-
1.6
ENST00000220809
6
ENSE00001617965
chr8:
42048932-42048890
43
TPA_HUMAN
25-39
15
0
-
-
1.7b
ENST00000220809
7b
ENSE00001727998
chr8:
42046589-42046452
138
TPA_HUMAN
39-85
47
0
-
-
1.8b
ENST00000220809
8b
ENSE00000692406
chr8:
42045534-42045424
111
TPA_HUMAN
85-122
38
0
-
-
1.9d
ENST00000220809
9d
ENSE00001128022
chr8:
42045090-42044916
175
TPA_HUMAN
122-180
59
0
-
-
1.9f
ENST00000220809
9f
ENSE00000692402
chr8:
42042690-42042599
92
TPA_HUMAN
180-211
32
1
A:1-3
3
1.10a
ENST00000220809
10a
ENSE00000692400
chr8:
42040408-42040237
172
TPA_HUMAN
211-268
58
1
A:3-60
58
1.11
ENST00000220809
11
ENSE00002184621
chr8:
42039540-42039455
86
TPA_HUMAN
268-297
30
1
A:60-89
30
1.12b
ENST00000220809
12b
ENSE00001674536
chr8:
42038203-42038008
196
TPA_HUMAN
297-362
66
1
A:89-90
2
1.13b
ENST00000220809
13b
ENSE00001605389
chr8:
42037896-42037760
137
TPA_HUMAN
362-408
47
0
-
-
1.14a
ENST00000220809
14a
ENSE00001793485
chr8:
42037584-42037444
141
TPA_HUMAN
408-455
48
0
-
-
1.15
ENST00000220809
15
ENSE00001758697
chr8:
42036581-42036415
167
TPA_HUMAN
455-510
56
0
-
-
1.16e
ENST00000220809
16e
ENSE00002116161
chr8:
42033669-42032751
919
TPA_HUMAN
511-562
52
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pk2a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Plasminogen
(20)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d1pk2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pk2A00 (A:1-90)
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)
Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
1pk2A00
A:1-90
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Kringle_1pk2A01 (A:7-88)
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Clans
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Clan
:
no clan defined [family: Kringle]
(26)
Family
:
Kringle
(26)
Homo sapiens (Human)
(19)
1a
Kringle-1pk2A01
A:7-88
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Chain A
Asymmetric Unit 1
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