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1PJU
Biol. Unit 6
Info
Asym.Unit (80 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (20 KB)
Biol.Unit 3 (21 KB)
Biol.Unit 4 (20 KB)
Biol.Unit 5 (71 KB)
Biol.Unit 6 (74 KB)
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(1)
Title
:
UNBOUND FORM OF TOMATO INHIBITOR-II
Authors
:
I. H. Barrette-Ng, K. K. -S. Ng, M. M. Cherney, G. Pearce, U. Ghani, C. A. R M. N. G. James
Date
:
03 Jun 03 (Deposition) - 16 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: B,D (2x)
Biol. Unit 6: A,B,C,D (1x)
Keywords
:
Proteinase Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. H. Barrette-Ng, K. K. -S. Ng, M. M. Cherney, G. Pearce, U. Ghani, C. A. Ryan, M. N. G. James
Unbound Form Of Tomato Inhibitor-Ii Reveals Interdomain Flexibility And Conformational Variability In The Reactive Site Loops
J. Biol. Chem. V. 278 31391 2003
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:29 , CYS B:30 , CYS B:31 , ASP B:65
BINDING SITE FOR RESIDUE SO4 B 501
2
AC2
SOFTWARE
ASN A:29 , CYS A:30 , CYS A:31 , ASP A:65
BINDING SITE FOR RESIDUE SO4 A 502
3
AC3
SOFTWARE
ASN C:29 , CYS C:30 , CYS C:31 , ASP C:65
BINDING SITE FOR RESIDUE SO4 C 503
4
AC4
SOFTWARE
ARG C:75 , SER C:76 , GLN C:77
BINDING SITE FOR RESIDUE SO4 C 504
5
AC5
SOFTWARE
ARG B:56 , ASN D:29 , CYS D:30 , CYS D:31 , ASP D:65
BINDING SITE FOR RESIDUE SO4 D 505
6
AC6
SOFTWARE
ARG A:75 , GLN A:77
BINDING SITE FOR RESIDUE SO4 A 506
7
AC7
SOFTWARE
ARG A:75 , LYS A:95 , GLU A:109 , ARG D:75 , HOH D:531
BINDING SITE FOR RESIDUE SO4 D 507
8
AC8
SOFTWARE
ARG B:75 , TYR B:98 , GLU B:109 , PRO C:74
BINDING SITE FOR RESIDUE SO4 B 508
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1pjua1 (A:16-74)
1b: SCOP_d1pjua2 (A:2-15,A:75-116)
1c: SCOP_d1pjub1 (B:16-74)
1d: SCOP_d1pjub2 (B:3-15,B:75-115)
1e: SCOP_d1pjuc1 (C:16-74)
1f: SCOP_d1pjuc2 (C:2-15,C:75-115)
1g: SCOP_d1pjud1 (D:16-74)
1h: SCOP_d1pjud2 (D:2-15,D:75-115)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Plant proteinase inhibitors
(10)
Superfamily
:
Plant proteinase inhibitors
(10)
Family
:
Plant proteinase inhibitors
(10)
Protein domain
:
Wound-induced proteinase inhibitor-II
(2)
Tomato (Lycopersicon esculentum) [TaxId: 4081]
(2)
1a
d1pjua1
A:16-74
1b
d1pjua2
A:2-15,A:75-116
1c
d1pjub1
B:16-74
1d
d1pjub2
B:3-15,B:75-115
1e
d1pjuc1
C:16-74
1f
d1pjuc2
C:2-15,C:75-115
1g
d1pjud1
D:16-74
1h
d1pjud2
D:2-15,D:75-115
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1pjuA01 (A:24-86)
1b: CATH_1pjuB01 (B:24-86)
1c: CATH_1pjuC01 (C:24-86)
1d: CATH_1pjuD01 (D:24-86)
1e: CATH_1pjuA02 (A:2-23,A:87-115)
1f: CATH_1pjuC02 (C:2-23,C:87-115)
1g: CATH_1pjuD02 (D:2-23,D:87-115)
1h: CATH_1pjuB02 (B:3-23,B:87-115)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.30, no name defined]
(93)
Solanum lycopersicum. Organism_taxid: 4081. Strain: bonny best
(1)
1a
1pjuA01
A:24-86
1b
1pjuB01
B:24-86
1c
1pjuC01
C:24-86
1d
1pjuD01
D:24-86
1e
1pjuA02
A:2-23,A:87-115
1f
1pjuC02
C:2-23,C:87-115
1g
1pjuD02
D:2-23,D:87-115
1h
1pjuB02
B:3-23,B:87-115
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Prot_inhib_II_1pjuD01 (D:57-110)
1b: PFAM_Prot_inhib_II_1pjuD02 (D:57-110)
1c: PFAM_Prot_inhib_II_1pjuD03 (D:57-110)
1d: PFAM_Prot_inhib_II_1pjuD04 (D:57-110)
1e: PFAM_Prot_inhib_II_1pjuD05 (D:57-110)
1f: PFAM_Prot_inhib_II_1pjuD06 (D:57-110)
1g: PFAM_Prot_inhib_II_1pjuD07 (D:57-110)
1h: PFAM_Prot_inhib_II_1pjuD08 (D:57-110)
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)
(
)
Clan
:
no clan defined [family: Prot_inhib_II]
(6)
Family
:
Prot_inhib_II
(6)
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
(2)
1a
Prot_inhib_II-1pjuD01
D:57-110
1b
Prot_inhib_II-1pjuD02
D:57-110
1c
Prot_inhib_II-1pjuD03
D:57-110
1d
Prot_inhib_II-1pjuD04
D:57-110
1e
Prot_inhib_II-1pjuD05
D:57-110
1f
Prot_inhib_II-1pjuD06
D:57-110
1g
Prot_inhib_II-1pjuD07
D:57-110
1h
Prot_inhib_II-1pjuD08
D:57-110
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Asym.Unit (80 KB)
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Biol.Unit 3 (21 KB)
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Biol.Unit 5 (71 KB)
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