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1PJM
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
MOUSE IMPORTIN ALPHA-BIPARTITE NLS FROM HUMAN RETINOBLASTOMA PROTEIN COMPLEX
Authors
:
M. R. M. Fontes, T. Teh, D. Jans, R. I. Brinkworth, B. Kobe
Date
:
03 Jun 03 (Deposition) - 19 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Importin Alpha/Karyopherin Alpha, Nuclear Localization Sequence (Nls) Recognition, Bipartite Nls, Human Retinoblastoma Protein, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. R. M. Fontes, T. Teh, D. Jans, R. I. Brinkworth, B. Kobe
Structural Basis For The Specificity Of Bipartite Nuclear Localization Sequence Binding By Importin-Alpha
J. Biol. Chem. V. 278 27981 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (B:162-204|B:119-162|B:204-230|B:25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
IMA1_MOUSE
162-204
119-162
204-230
251-293
293-335
335-377
6
B:162-204
B:119-162
B:204-230
B:251-293
B:293-335
B:335-377
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Exons
(1, 1)
Info
All Exons
Exon 1.26c (A:859-878 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.25/1.26c
2: Boundary 1.26c/1.27
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000267163
1b
ENSE00002199946
chr13:
48877911-48878185
275
RB_HUMAN
1-46
46
0
-
-
1.2
ENST00000267163
2
ENSE00000939664
chr13:
48881416-48881542
127
RB_HUMAN
46-88
43
0
-
-
1.3
ENST00000267163
3
ENSE00000939665
chr13:
48916735-48916850
116
RB_HUMAN
89-127
39
0
-
-
1.4
ENST00000267163
4
ENSE00000939666
chr13:
48919216-48919335
120
RB_HUMAN
127-167
41
0
-
-
1.5
ENST00000267163
5
ENSE00000939667
chr13:
48921961-48921999
39
RB_HUMAN
167-180
14
0
-
-
1.6
ENST00000267163
6
ENSE00000939668
chr13:
48923092-48923159
68
RB_HUMAN
180-203
24
0
-
-
1.7a
ENST00000267163
7a
ENSE00000939669
chr13:
48934153-48934263
111
RB_HUMAN
203-240
38
0
-
-
1.8b
ENST00000267163
8b
ENSE00000939670
chr13:
48936951-48937093
143
RB_HUMAN
240-287
48
0
-
-
1.9
ENST00000267163
9
ENSE00000939671
chr13:
48939030-48939107
78
RB_HUMAN
288-313
26
0
-
-
1.10
ENST00000267163
10
ENSE00000939672
chr13:
48941630-48941739
110
RB_HUMAN
314-350
37
0
-
-
1.11
ENST00000267163
11
ENSE00000939673
chr13:
48942663-48942740
78
RB_HUMAN
350-376
27
0
-
-
1.12
ENST00000267163
12
ENSE00000939674
chr13:
48947541-48947628
88
RB_HUMAN
376-405
30
0
-
-
1.13
ENST00000267163
13
ENSE00000939675
chr13:
48951054-48951170
117
RB_HUMAN
406-444
39
0
-
-
1.14
ENST00000267163
14
ENSE00000939676
chr13:
48953730-48953786
57
RB_HUMAN
445-463
19
0
-
-
1.15
ENST00000267163
15
ENSE00000939677
chr13:
48954189-48954220
32
RB_HUMAN
464-474
11
0
-
-
1.16
ENST00000267163
16
ENSE00000939678
chr13:
48954301-48954377
77
RB_HUMAN
474-500
27
0
-
-
1.17
ENST00000267163
17
ENSE00000939679
chr13:
48955383-48955579
197
RB_HUMAN
500-565
66
0
-
-
1.19
ENST00000267163
19
ENSE00000939680
chr13:
49027129-49027247
119
RB_HUMAN
566-605
40
0
-
-
1.20b
ENST00000267163
20b
ENSE00000939681
chr13:
49030340-49030485
146
RB_HUMAN
605-654
50
0
-
-
1.21
ENST00000267163
21
ENSE00000939682
chr13:
49033824-49033969
146
RB_HUMAN
654-702
49
0
-
-
1.22
ENST00000267163
22
ENSE00000939683
chr13:
49037867-49037971
105
RB_HUMAN
703-737
35
0
-
-
1.23
ENST00000267163
23
ENSE00000939684
chr13:
49039134-49039247
114
RB_HUMAN
738-775
38
0
-
-
1.24
ENST00000267163
24
ENSE00000939685
chr13:
49039341-49039504
164
RB_HUMAN
776-830
55
0
-
-
1.25
ENST00000267163
25
ENSE00001003962
chr13:
49047496-49047526
31
RB_HUMAN
830-840
11
0
-
-
1.26c
ENST00000267163
26c
ENSE00000939686
chr13:
49050837-49050979
143
RB_HUMAN
841-888
48
1
A:859-878 (gaps)
29
1.27
ENST00000267163
27
ENSE00000939687
chr13:
49051491-49051540
50
RB_HUMAN
888-905
18
0
-
-
1.28c
ENST00000267163
28c
ENSE00001241067
chr13:
49054134-49056122
1989
RB_HUMAN
905-928
24
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pjmb_ (B:)
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Protein Domains
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(
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Organisms
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)
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)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
Importin alpha
(17)
Mouse (Mus musculus) [TaxId: 10090]
(17)
1a
d1pjmb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pjmB00 (B:71-497)
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Organisms
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)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
[unclassified]
(11)
1a
1pjmB00
B:71-497
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Pfam Domains
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Atom Selection
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Protein
Nucleic
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Asymmetric Unit 1
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Asym.Unit (77 KB)
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