PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1PJH
Asym. Unit
Info
Asym.Unit (139 KB)
Biol.Unit 1 (264 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL STUDIES ON DELTA3-DELTA2-ENOYL-COA ISOMERASE: THE VARIABLE MODE OF ASSEMBLY OF THE TRIMERIC DISKS OF THE CROTONASE SUPERFAMILY
Authors
:
A. M. Mursula, J. K. Hiltunen, R. K. Wierenga
Date
:
03 Jun 03 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Beta-Beta-Alpha Spiral Fold, Inter-Trimer Contacts, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Mursula, J. K. Hiltunen, R. K. Wierenga
Structural Studies On Delta(3)-Delta(2)-Enoyl-Coa Isomerase The Variable Mode Of Assembly Of The Trimeric Disks Of The Crotonase Superfamily.
Febs Lett. V. 557 81 2004
[
close entry info
]
Hetero Components
(2, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY C:63 , ASN C:205 , ALA C:206 , GLU C:207
BINDING SITE FOR RESIDUE SO4 C 500
02
AC2
SOFTWARE
GLY A:63 , ASN A:205 , ALA A:206 , GLU A:207 , HOH A:1419 , HOH A:1422 , HOH A:1435 , HOH B:1435
BINDING SITE FOR RESIDUE SO4 A 501
03
AC3
SOFTWARE
ASN B:141 , ASN B:200 , MET B:201 , PRO B:202 , SO4 B:503
BINDING SITE FOR RESIDUE SO4 B 502
04
AC4
SOFTWARE
ARG B:64 , LYS B:143 , PRO B:202 , SER B:203 , SER B:204 , SO4 B:502
BINDING SITE FOR RESIDUE SO4 B 503
05
AC5
SOFTWARE
ARG C:64 , LYS C:143 , SER C:203 , SER C:204
BINDING SITE FOR RESIDUE SO4 C 504
06
AC6
SOFTWARE
ARG C:64 , LYS C:143 , SER C:203 , HOH C:1342 , HOH C:1398
BINDING SITE FOR RESIDUE SO4 C 505
07
AC7
SOFTWARE
ARG A:64 , LYS A:143 , SER A:203 , SER A:204 , SO4 A:508
BINDING SITE FOR RESIDUE SO4 A 506
08
AC8
SOFTWARE
TYR B:225 , PRO B:227 , HOH B:1427 , LYS C:257 , TYR C:258 , ASP C:261
BINDING SITE FOR RESIDUE SO4 B 507
09
AC9
SOFTWARE
ASN A:141 , ASN A:200 , MET A:201 , PRO A:202 , SO4 A:506
BINDING SITE FOR RESIDUE SO4 A 508
10
BC1
SOFTWARE
TYR A:225 , PRO A:227 , LYS B:257 , TYR B:258 , ASP B:261
BINDING SITE FOR RESIDUE SO4 A 509
11
BC2
SOFTWARE
GLY A:69 , ALA A:70 , GLY A:125 , LEU A:126 , LEU A:155 , GLU A:158 , HOH A:1432
BINDING SITE FOR RESIDUE GOL A 1301
12
BC3
SOFTWARE
GLY B:69 , ALA B:70 , GLY B:125 , LEU B:126 , LEU B:155 , GLU B:158 , HOH B:1394 , HOH B:1415
BINDING SITE FOR RESIDUE GOL B 1302
13
BC4
SOFTWARE
ALA C:70 , ARG C:100 , GLY C:125 , LEU C:126 , GLU C:158
BINDING SITE FOR RESIDUE GOL C 1303
14
BC5
SOFTWARE
ILE A:195 , SER A:196 , HOH A:1364 , GLU B:176 , LYS B:182 , ILE B:188 , HOH B:1418
BINDING SITE FOR RESIDUE GOL A 1304
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 3)
Info
All Exons
Exon 1.1 (A:5-270 (gaps) | B:4-270 (gaps) | ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YLR284C
1
YLR284C.1
XII:707042-706200
843
ECI1_YEAST
1-280
280
3
A:5-270 (gaps)
B:4-270 (gaps)
C:5-270 (gaps)
266
267
266
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1pjha_ (A:)
1b: SCOP_d1pjhb_ (B:)
1c: SCOP_d1pjhc_ (C:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d1pjha_
A:
1b
d1pjhb_
B:
1c
d1pjhc_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1pjhC00 (C:5-270)
1b: CATH_1pjhA00 (A:5-270)
1c: CATH_1pjhB00 (B:4-270)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Baker's yeast (Saccharomyces cerevisiae)
(10)
1a
1pjhC00
C:5-270
1b
1pjhA00
A:5-270
1c
1pjhB00
B:4-270
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_ECH_1pjhC01 (C:12-258)
1b: PFAM_ECH_1pjhC02 (C:12-258)
1c: PFAM_ECH_1pjhC03 (C:12-258)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
ECH-1pjhC01
C:12-258
1b
ECH-1pjhC02
C:12-258
1c
ECH-1pjhC03
C:12-258
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (264 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1PJH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
