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1PJA
Asym. Unit
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Asym.Unit (51 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF PALMITOYL PROTEIN THIOESTERASE-2 REVEALS THE BASIS FOR DIVERGENT SUBSTRATE SPECIFICITIES OF THE TWO LYSOSOMAL THIOESTERASES (PPT1 AND PPT2)
Authors
:
G. Calero, P. Gupta, M. C. Nonato, S. Tandel, E. R. Biehl, S. L. Hofmann, J
Date
:
02 Jun 03 (Deposition) - 02 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycoprotein, Lysosome
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. Calero, P. Gupta, M. C. Nonato, S. Tandel, E. R. Biehl, S. L. Hofmann, J. Clardy
The Crystal Structure Of Palmitoyl Protein Thioesterase-2 (Ppt2) Reveals The Basis For Divergent Substrate Specificities Of The Two Lysosomal Thioesterases, Ppt1 And Ppt2.
J. Biol. Chem. V. 278 37957 2003
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:190 , ARG A:202 , PRO A:205
BINDING SITE FOR RESIDUE NAG A 2285
2
AC2
SOFTWARE
PRO A:168 , ASN A:190 , HIS A:204 , PRO A:205
BINDING SITE FOR RESIDUE GOL A 1614
3
AC3
SOFTWARE
ASP A:72 , PHE A:74 , ASP A:75 , ARG A:77 , GLU A:78
BINDING SITE FOR RESIDUE GOL A 1615
4
AC4
SOFTWARE
SER A:111 , GLN A:142 , THR A:146 , TYR A:148 , HOH A:2287
BINDING SITE FOR RESIDUE GOL A 1616
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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Exons
(8, 8)
Info
All Exons
Exon 1.40c (A:35-61)
Exon 1.41b (A:62-113)
Exon 1.42b (A:113-145)
Exon 1.43 (A:145-181)
Exon 1.44d (A:181-209)
Exon 1.45b (A:209-237)
Exon 1.50d (A:237-255)
Exon 1.51c (A:256-302)
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All Exon Boundaries
1: Boundary 1.39b/1.40c
2: Boundary 1.40c/1.41b
3: Boundary 1.41b/1.42b
4: Boundary 1.42b/1.43
5: Boundary 1.43/1.44d
6: Boundary 1.44d/1.45b
7: Boundary 1.45b/1.50d
8: Boundary 1.50d/1.51c
9: Boundary 1.51c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.38d
ENST00000395523
38d
ENSE00001677395
chr6:
32121354-32121413
60
PPT2_HUMAN
-
0
0
-
-
1.39b
ENST00000395523
39b
ENSE00001776007
chr6:
32121776-32122181
406
PPT2_HUMAN
-
0
0
-
-
1.40c
ENST00000395523
40c
ENSE00002176567
chr6:
32122364-32122554
191
PPT2_HUMAN
1-61
61
1
A:35-61
27
1.41b
ENST00000395523
41b
ENSE00001603945
chr6:
32122807-32122960
154
PPT2_HUMAN
62-113
52
1
A:62-113
52
1.42b
ENST00000395523
42b
ENSE00001601337
chr6:
32123465-32123560
96
PPT2_HUMAN
113-145
33
1
A:113-145
33
1.43
ENST00000395523
43
ENSE00002176462
chr6:
32123648-32123755
108
PPT2_HUMAN
145-181
37
1
A:145-181
37
1.44d
ENST00000395523
44d
ENSE00001760316
chr6:
32125414-32125497
84
PPT2_HUMAN
181-209
29
1
A:181-209
29
1.45b
ENST00000395523
45b
ENSE00002165253
chr6:
32125617-32125701
85
PPT2_HUMAN
209-237
29
1
A:209-237
29
1.50d
ENST00000395523
50d
ENSE00001599324
chr6:
32130345-32130399
55
PPT2_HUMAN
237-255
19
1
A:237-255
19
1.51c
ENST00000395523
51c
ENSE00001606526
chr6:
32130584-32131455
872
PPT2_HUMAN
256-302
47
1
A:256-302
47
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pjaa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Thioesterases
(6)
Protein domain
:
Palmitoyl protein thioesterase 2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1pjaa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1pjaA00 (A:35-302)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1pjaA00
A:35-302
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Palm_thioest_1pjaA01 (A:35-298)
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Clan
:
AB_hydrolase
(347)
Family
:
Palm_thioest
(1)
Homo sapiens (Human)
(1)
1a
Palm_thioest-1pjaA01
A:35-298
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Chain A
Asymmetric Unit 1
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Asym.Unit (51 KB)
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