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1PJ9
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (127 KB)
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(1)
Title
:
BACILLUS CIRCULANS STRAIN 251 LOOP MUTANT 183-195
Authors
:
H. J. Rozeboom, B. W. Dijkstra
Date
:
02 Jun 03 (Deposition) - 03 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosyltransferase, Transferase, Cyclodextrin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Leemhuis, H. J. Rozeboom, B. W. Dijkstra, L. Dijkhuizen
Improved Thermostability Of Bacillus Circulans Cyclodextrin Glycosyltransferase By The Introduction Of A Salt Bridge
Proteins: V. 54 128 2004 Struct. , Funct. , Genet.
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
3e: ALPHA-D-GLUCOSE (GLCe)
3f: ALPHA-D-GLUCOSE (GLCf)
3g: ALPHA-D-GLUCOSE (GLCg)
3h: ALPHA-D-GLUCOSE (GLCh)
3i: ALPHA-D-GLUCOSE (GLCi)
3j: ALPHA-D-GLUCOSE (GLCj)
3k: ALPHA-D-GLUCOSE (GLCk)
4a: MALTOSE (MALa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
3
Ligand/Ion
ACETIC ACID
2
CA
3
Ligand/Ion
CALCIUM ION
3
GLC
11
Ligand/Ion
ALPHA-D-GLUCOSE
4
MAL
1
Ligand/Ion
MALTOSE
5
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:411 , ARG A:412 , TRP A:413 , ILE A:414 , SER A:445 , GLY A:446 , ALA A:539 , ASP A:540 , HOH A:908 , HOH A:919 , HOH A:1092 , HOH A:1173 , HOH A:1258 , HOH A:1564 , HOH A:1639
BINDING SITE FOR RESIDUE MAL A 887
02
AC2
SOFTWARE
LYS A:232 , PHE A:259 , GLC A:694 , HOH A:1537
BINDING SITE FOR RESIDUE GLC A 693
03
AC3
SOFTWARE
TYR A:195 , ALA A:230 , HIS A:233 , GLU A:257 , ASP A:328 , GLC A:693 , GLC A:695 , HOH A:1103
BINDING SITE FOR RESIDUE GLC A 694
04
AC4
SOFTWARE
TYR A:100 , HIS A:140 , LEU A:197 , ARG A:227 , ASP A:229 , ALA A:230 , GLU A:257 , HIS A:327 , ASP A:328 , ARG A:375 , GLC A:694 , GLC A:696
BINDING SITE FOR RESIDUE GLC A 695
05
AC5
SOFTWARE
TYR A:100 , TRP A:101 , LEU A:197 , ASP A:371 , ARG A:375 , GLC A:695 , HOH A:1266
BINDING SITE FOR RESIDUE GLC A 696
06
AC6
SOFTWARE
ARG A:339 , TYR A:365 , SER A:384 , THR A:386 , GLC A:698 , HOH A:1346 , HOH A:1383
BINDING SITE FOR RESIDUE GLC A 697
07
AC7
SOFTWARE
LYS A:651 , GLU A:663 , GLC A:697 , GLC A:699 , HOH A:1052 , HOH A:1091 , HOH A:1449 , HOH A:1604 , HOH A:1641
BINDING SITE FOR RESIDUE GLC A 698
08
AC8
SOFTWARE
TRP A:662 , ASN A:667 , GLC A:698 , HOH A:1111 , HOH A:1343 , HOH A:1634
BINDING SITE FOR RESIDUE GLC A 699
09
AC9
SOFTWARE
VAL A:262 , GLN A:287 , ARG A:290 , ARG A:294 , ASP A:295 , GLU A:330 , HOH A:1150 , HOH A:1155 , HOH A:1450 , HOH A:1467
BINDING SITE FOR RESIDUE GLC A 800
10
BC1
SOFTWARE
GLC A:803
BINDING SITE FOR RESIDUE GLC A 802
11
BC2
SOFTWARE
THR A:598 , ALA A:599 , LEU A:600 , TYR A:633 , GLC A:802 , GLC A:804 , HOH A:1368 , HOH A:1431
BINDING SITE FOR RESIDUE GLC A 803
12
BC3
SOFTWARE
ALA A:599 , LEU A:600 , GLY A:601 , GLN A:602 , ASN A:603 , ASN A:627 , GLN A:628 , GLC A:803 , HOH A:1454
BINDING SITE FOR RESIDUE GLC A 804
13
BC4
SOFTWARE
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:986
BINDING SITE FOR RESIDUE CA A 890
14
BC5
SOFTWARE
ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233 , HOH A:896 , HOH A:940 , HOH A:1014
BINDING SITE FOR RESIDUE CA A 891
15
BC6
SOFTWARE
ALA A:315 , ASP A:577 , HOH A:939 , HOH A:1140 , HOH A:1312 , HOH A:1338 , HOH A:1656
BINDING SITE FOR RESIDUE CA A 892
16
BC7
SOFTWARE
GLN A:586 , SER A:674 , HOH A:1057 , HOH A:1145
BINDING SITE FOR RESIDUE MPD A 801
17
BC8
SOFTWARE
ARG A:377 , ILE A:378 , PRO A:379 , HOH A:980 , HOH A:1688
BINDING SITE FOR RESIDUE ACY A 805
18
BC9
SOFTWARE
MET A:366 , SER A:367 , HOH A:1005
BINDING SITE FOR RESIDUE ACY A 806
19
CC1
SOFTWARE
LYS A:424 , HOH A:1218
BINDING SITE FOR RESIDUE ACY A 810
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM20 (A:581-686)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM20
PS51166
CBM20 (carbohydrate binding type-20) domain profile.
CDGT2_BACCI
608-713
1
A:581-686
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1pj9a3 (A:407-495)
2a: SCOP_d1pj9a1 (A:496-581)
3a: SCOP_d1pj9a2 (A:582-686)
4a: SCOP_d1pj9a4 (A:1-406)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
1a
d1pj9a3
A:407-495
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Cyclomaltodextrin glycanotransferase, domain D
(49)
Bacillus circulans, different strains [TaxId: 1397]
(36)
2a
d1pj9a1
A:496-581
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
Cyclodextrin glycosyltransferase, C-terminal domain
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
3a
d1pj9a2
A:582-686
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
4a
d1pj9a4
A:1-406
[
close SCOP info
]
CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1pj9A01 (A:1-400)
2a: CATH_1pj9A02 (A:401-495)
3a: CATH_1pj9A04 (A:583-685)
3b: CATH_1pj9A03 (A:496-582)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
1a
1pj9A01
A:1-400
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
2a
1pj9A02
A:401-495
Homologous Superfamily
:
Immunoglobulins
(2282)
Bacillus circulans. Organism_taxid: 1397. Strain: 251.
(11)
3a
1pj9A04
A:583-685
3b
1pj9A03
A:496-582
[
close CATH info
]
Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_TIG_1pj9A01 (A:499-581)
2a: PFAM_Alpha_amylase_C_1pj9A02 (A:413-495)
3a: PFAM_CBM_20_1pj9A03 (A:586-682)
4a: PFAM_Alpha_amylase_1pj9A04 (A:52-372)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Bacillus circulans
(6)
1a
TIG-1pj9A01
A:499-581
Clan
:
GHD
(106)
Family
:
Alpha-amylase_C
(82)
Bacillus circulans
(6)
2a
Alpha-amylase_C-1pj9A02
A:413-495
Family
:
CBM_20
(20)
Bacillus circulans
(6)
3a
CBM_20-1pj9A03
A:586-682
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Bacillus circulans
(6)
4a
Alpha-amylase-1pj9A04
A:52-372
[
close Pfam info
]
Atom Selection
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)
Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (133 KB)
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