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1PJ1
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (121 KB)
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(1)
Title
:
RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F SOAKED WITH FERROUS IONS AT PH 5
Authors
:
W. C. Voegtli, M. Sommerhalter, L. Saleh, J. Baldwin, J. M. Bollinger Jr. , A. C. Rosenzweig
Date
:
30 May 03 (Deposition) - 13 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Four Helix Bundle, Diferrous Cluster, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. C. Voegtli, M. Sommerhalter, L. Saleh, J. Baldwin, J. M. Bollinger Jr. , A. C. Rosenzweig
Variable Coordination Geometries At The Diiron(Ii) Active Site Of Ribonucleotide Reductase R2.
J. Am. Chem. Soc. V. 125 15822 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
2c: MERCURY (II) ION (HGc)
2d: MERCURY (II) ION (HGd)
2e: MERCURY (II) ION (HGe)
2f: MERCURY (II) ION (HGf)
2g: MERCURY (II) ION (HGg)
2h: MERCURY (II) ION (HGh)
2i: MERCURY (II) ION (HGi)
2j: MERCURY (II) ION (HGj)
2k: MERCURY (II) ION (HGk)
2l: MERCURY (II) ION (HGl)
2m: MERCURY (II) ION (HGm)
2n: MERCURY (II) ION (HGn)
2o: MERCURY (II) ION (HGo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
HG
15
Ligand/Ion
MERCURY (II) ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:84 , GLU A:115 , HIS A:118 , GLU A:238
BINDING SITE FOR RESIDUE FE A 406
02
AC2
SOFTWARE
TRP A:111 , GLU A:115 , GLU A:204 , GLU A:238 , HIS A:241
BINDING SITE FOR RESIDUE FE A 407
03
AC3
SOFTWARE
GLU B:84 , GLU B:115 , HIS B:118 , GLU B:238
BINDING SITE FOR RESIDUE FE B 408
04
AC4
SOFTWARE
GLU B:115 , GLU B:204 , PHE B:208 , GLU B:238 , HIS B:241
BINDING SITE FOR RESIDUE FE B 409
05
AC5
SOFTWARE
TYR A:194 , ALA A:265 , CYS A:272
BINDING SITE FOR RESIDUE HG A 408
06
AC6
SOFTWARE
TYR A:157 , CYS A:196 , HG A:413
BINDING SITE FOR RESIDUE HG A 409
07
AC7
SOFTWARE
VAL A:210 , CYS A:214
BINDING SITE FOR RESIDUE HG A 410
08
AC8
SOFTWARE
TYR B:156 , TYR B:157 , CYS B:196 , VAL B:200 , HG B:417
BINDING SITE FOR RESIDUE HG B 410
09
AC9
SOFTWARE
TYR B:194 , LEU B:195 , CYS B:268 , CYS B:272 , HOH B:512
BINDING SITE FOR RESIDUE HG B 411
10
BC1
SOFTWARE
VAL B:210 , ALA B:213 , CYS B:214 , LEU B:304
BINDING SITE FOR RESIDUE HG B 412
11
BC2
SOFTWARE
CYS A:305 , GLU A:309
BINDING SITE FOR RESIDUE HG A 411
12
BC3
SOFTWARE
MET B:198 , CYS B:272 , LEU B:275 , PHE B:276
BINDING SITE FOR RESIDUE HG B 413
13
BC4
SOFTWARE
LYS A:191 , CYS A:268
BINDING SITE FOR RESIDUE HG A 412
14
BC5
SOFTWARE
LYS B:284 , CYS B:305 , GLU B:309 , HG B:416
BINDING SITE FOR RESIDUE HG B 414
15
BC6
SOFTWARE
ILE B:72 , CYS B:214 , PHE B:218 , MET B:296 , LEU B:299
BINDING SITE FOR RESIDUE HG B 415
16
BC7
SOFTWARE
CYS B:305 , GLN B:306 , GLU B:309 , HG B:414
BINDING SITE FOR RESIDUE HG B 416
17
BC8
SOFTWARE
TYR B:157 , CYS B:196 , VAL B:200 , HG B:410
BINDING SITE FOR RESIDUE HG B 417
18
BC9
SOFTWARE
TYR A:157 , CYS A:196 , HG A:409
BINDING SITE FOR RESIDUE HG A 413
19
CC1
SOFTWARE
TYR A:194 , LEU A:195 , CYS A:268 , CYS A:272
BINDING SITE FOR RESIDUE HG A 414
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RIBORED_SMALL (A:114-130,B:114-130)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_SMALL
PS00368
Ribonucleotide reductase small subunit signature.
RIR2_ECOLI
115-131
2
A:114-130
B:114-130
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pj1a_ (A:)
1b: SCOP_d1pj1b_ (B:)
View:
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Classes
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(
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Folds
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Superfamilies
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(
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Ribonucleotide reductase R2
(45)
Escherichia coli [TaxId: 562]
(24)
1a
d1pj1a_
A:
1b
d1pj1b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pj1A00 (A:1-340)
1b: CATH_1pj1B00 (B:1-340)
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Topologies
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Escherichia coli. Organism_taxid: 562.
(10)
1a
1pj1A00
A:1-340
1b
1pj1B00
B:1-340
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Pfam Domains
(0, 0)
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all PFAM domains
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Protein & NOT Variant
Protein & NOT Site
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Chain A
Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (126 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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