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1PJ0
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (118 KB)
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(1)
Title
:
RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F MUTANT SOAKED WITH FERROUS IONS AT NEUTRAL PH
Authors
:
W. C. Voegtli, M. Sommerhalter, L. Saleh, J. Baldwin, J. M. Bollinger J A. C. Rosenzweig
Date
:
30 May 03 (Deposition) - 13 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Four Helix Bundle, Diferrous Cluster, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. C. Voegtli, M. Sommerhalter, L. Saleh, J. Baldwin, J. M. Bollinger Jr. , A. C. Rosenzweig
Variable Coordination Geometries At The Diiron(Ii) Active Site Of Ribonucleotide Reductase R2.
J. Am. Chem. Soc. V. 125 15822 2003
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
2a: MERCURY (II) ION (HGa)
2b: MERCURY (II) ION (HGb)
2c: MERCURY (II) ION (HGc)
2d: MERCURY (II) ION (HGd)
2e: MERCURY (II) ION (HGe)
2f: MERCURY (II) ION (HGf)
2g: MERCURY (II) ION (HGg)
2h: MERCURY (II) ION (HGh)
2i: MERCURY (II) ION (HGi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
4
Ligand/Ion
FE (III) ION
2
HG
9
Ligand/Ion
MERCURY (II) ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:84 , GLU A:115 , HIS A:118 , GLU A:238
BINDING SITE FOR RESIDUE FE A 376
02
AC2
SOFTWARE
TRP A:111 , GLU A:115 , GLU A:204 , GLU A:238 , HIS A:241
BINDING SITE FOR RESIDUE FE A 377
03
AC3
SOFTWARE
GLU B:84 , GLU B:115 , HIS B:118 , GLU B:238
BINDING SITE FOR RESIDUE FE B 376
04
AC4
SOFTWARE
TRP B:111 , GLU B:115 , GLU B:204 , GLU B:238 , HIS B:241
BINDING SITE FOR RESIDUE FE B 377
05
AC5
SOFTWARE
TYR A:194 , ALA A:265 , CYS A:272
BINDING SITE FOR RESIDUE HG A 378
06
AC6
SOFTWARE
TYR A:157 , CYS A:196
BINDING SITE FOR RESIDUE HG A 379
07
AC7
SOFTWARE
VAL A:210 , CYS A:214
BINDING SITE FOR RESIDUE HG A 380
08
AC8
SOFTWARE
TYR B:156 , TYR B:157 , CYS B:196 , VAL B:200
BINDING SITE FOR RESIDUE HG B 378
09
AC9
SOFTWARE
TYR B:194 , CYS B:268 , CYS B:272
BINDING SITE FOR RESIDUE HG B 379
10
BC1
SOFTWARE
VAL B:210 , ALA B:213 , CYS B:214 , LEU B:304
BINDING SITE FOR RESIDUE HG B 380
11
BC2
SOFTWARE
LYS A:284 , CYS A:305 , GLN A:306 , GLU A:309
BINDING SITE FOR RESIDUE HG A 381
12
BC3
SOFTWARE
MET B:198 , CYS B:272 , LEU B:275
BINDING SITE FOR RESIDUE HG B 381
13
BC4
SOFTWARE
ILE A:264 , CYS A:268
BINDING SITE FOR RESIDUE HG A 382
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RIBORED_SMALL (A:114-130,B:114-130)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_SMALL
PS00368
Ribonucleotide reductase small subunit signature.
RIR2_ECOLI
115-131
2
A:114-130
B:114-130
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pj0a_ (A:)
1b: SCOP_d1pj0b_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Ribonucleotide reductase R2
(45)
Escherichia coli [TaxId: 562]
(24)
1a
d1pj0a_
A:
1b
d1pj0b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pj0A00 (A:1-340)
1b: CATH_1pj0B00 (B:1-340)
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Classes
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Escherichia coli. Organism_taxid: 562.
(10)
1a
1pj0A00
A:1-340
1b
1pj0B00
B:1-340
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ribonuc_red_sm_1pj0B01 (B:181-335)
1b: PFAM_Ribonuc_red_sm_1pj0B02 (B:181-335)
1c: PFAM_Ribonuc_red_sm_1pj0B03 (B:181-335)
1d: PFAM_Ribonuc_red_sm_1pj0B04 (B:181-335)
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Clan
:
Ferritin
(185)
Family
:
Ribonuc_red_sm
(41)
Escherichia coli (strain K12)
(22)
1a
Ribonuc_red_sm-1pj0B01
B:181-335
1b
Ribonuc_red_sm-1pj0B02
B:181-335
1c
Ribonuc_red_sm-1pj0B03
B:181-335
1d
Ribonuc_red_sm-1pj0B04
B:181-335
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Asymmetric Unit 1
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Asym.Unit (124 KB)
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