PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1PGU
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (199 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
YEAST ACTIN INTERACTING PROTEIN 1 (AIP1), SE-MET PROTEIN, MONOCLINIC CRYSTAL FORM
Authors
:
W. C. Voegtli, A. Y. Madrona, D. K. Wilson
Date
:
28 May 03 (Deposition) - 15 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Wd Repeat, Seven-Bladed Beta-Propeller, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. C. Voegtli, A. Y. Madrona, D. K. Wilson
The Structure Of Aip1P, A Wd Repeat Protein That Regulates Cofilin-Mediated Actin Depolymerization.
J. Biol. Chem. V. 278 34373 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 14)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:368 , ASP A:370 , HIS B:328 , GLU B:330
BINDING SITE FOR RESIDUE ZN A 616
2
AC2
SOFTWARE
HIS A:328 , GLU A:330 , HIS B:368 , ASP B:370
BINDING SITE FOR RESIDUE ZN B 616
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:2-613 (gaps) | B:2-615 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YMR092C
1
YMR092C.1
XIII:453478-451631
1848
AIP1_YEAST
1-615
615
2
A:2-613 (gaps)
B:2-615 (gaps)
612
614
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1pgua1 (A:2-326)
1b: SCOP_d1pgua2 (A:327-613)
1c: SCOP_d1pgub1 (B:2-326)
1d: SCOP_d1pgub2 (B:327-615)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
Actin interacting protein 1
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1pgua1
A:2-326
1b
d1pgua2
A:327-613
1c
d1pgub1
B:2-326
1d
d1pgub2
B:327-615
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1pguB02 (B:13-337)
1b: CATH_1pguA02 (A:12-335)
1c: CATH_1pguB01 (B:2-12,B:338-615)
1d: CATH_1pguA01 (A:3-11,A:336-613)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Baker's yeast (Saccharomyces cerevisiae)
(12)
1a
1pguB02
B:13-337
1b
1pguA02
A:12-335
1c
1pguB01
B:2-12,B:338-615
1d
1pguA01
A:3-11,A:336-613
[
close CATH info
]
Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_WD40_1pguB01 (B:574-611)
1b: PFAM_WD40_1pguB02 (B:574-611)
1c: PFAM_WD40_1pguB03 (B:574-611)
1d: PFAM_WD40_1pguB04 (B:574-611)
1e: PFAM_WD40_1pguB05 (B:574-611)
1f: PFAM_WD40_1pguB06 (B:574-611)
1g: PFAM_WD40_1pguB07 (B:574-611)
1h: PFAM_WD40_1pguB08 (B:574-611)
1i: PFAM_WD40_1pguB09 (B:574-611)
1j: PFAM_WD40_1pguB10 (B:574-611)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
1a
WD40-1pguB01
B:574-611
1b
WD40-1pguB02
B:574-611
1c
WD40-1pguB03
B:574-611
1d
WD40-1pguB04
B:574-611
1e
WD40-1pguB05
B:574-611
1f
WD40-1pguB06
B:574-611
1g
WD40-1pguB07
B:574-611
1h
WD40-1pguB08
B:574-611
1i
WD40-1pguB09
B:574-611
1j
WD40-1pguB10
B:574-611
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (205 KB)
Header - Asym.Unit
Biol.Unit 1 (199 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1PGU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help