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1PG4
Asym. Unit
Info
Asym.Unit (225 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (111 KB)
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(1)
Title
:
ACETYL COA SYNTHETASE, SALMONELLA ENTERICA
Authors
:
A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante- Semerena
Date
:
27 May 03 (Deposition) - 03 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Amp-Forming; Adenylate-Forming; Thioester-Forming, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Gulick, V. J. Starai, A. R. Horswill, K. M. Homick, J. C. Escalante-Semerena
The 1. 75 A Crystal Structure Of Acetyl-Coa Synthetase Bound To Adenosine-5'-Propylphosphate And Coenzyme A
Biochemistry V. 42 2866 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ... (PRXa)
5b: ADENOSINE-5'-MONOPHOSPHATE-PROPYL ... (PRXb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
COA
2
Ligand/Ion
COENZYME A
3
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
PRX
2
Ligand/Ion
ADENOSINE-5'-MONOPHOSPHATE-PROPYL ESTER
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:221 , ARG B:238
BINDING SITE FOR RESIDUE CL B 901
02
AC2
SOFTWARE
LYS A:221 , ARG A:238
BINDING SITE FOR RESIDUE CL A 902
03
AC3
SOFTWARE
VAL B:537 , HIS B:539 , ILE B:542 , HOH B:1893 , HOH B:2179 , HOH B:2180
BINDING SITE FOR RESIDUE MG B 903
04
AC4
SOFTWARE
VAL A:537 , HIS A:539 , ILE A:542 , HOH A:1877 , HOH A:1910 , HOH A:2208
BINDING SITE FOR RESIDUE MG A 904
05
AC5
SOFTWARE
PHE A:163 , GLY A:165 , ARG A:191 , TRP A:309 , ALA A:357 , THR A:359 , VAL A:386 , SER A:523 , GLY A:524 , ARG A:584 , PRO A:589 , HOH A:1854 , HOH A:1883 , HOH A:1923 , HOH A:2133 , HOH A:2162 , HOH A:2163
BINDING SITE FOR RESIDUE COA A 990
06
AC6
SOFTWARE
PHE B:163 , GLY B:165 , ARG B:191 , ILE B:196 , TRP B:309 , ALA B:357 , THR B:359 , VAL B:386 , SER B:523 , GLY B:524 , ARG B:584 , PRO B:589 , HOH B:1883 , HOH B:2010 , HOH B:2014 , HOH B:2060 , HOH B:2092 , HOH B:2093 , HOH B:2110 , HOH B:2131
BINDING SITE FOR RESIDUE COA B 991
07
AC7
SOFTWARE
THR A:311 , GLY A:387 , GLU A:388 , PRO A:389 , ASP A:411 , THR A:412 , TRP A:413 , TRP A:414 , GLN A:415 , THR A:416 , ASP A:500 , ILE A:512 , ARG A:515 , ARG A:526 , HOH A:1887 , HOH A:2054 , HOH A:2056 , HOH A:2078 , HOH A:2201
BINDING SITE FOR RESIDUE PRX A 999
08
AC8
SOFTWARE
THR B:311 , GLY B:387 , GLU B:388 , PRO B:389 , ASP B:411 , THR B:412 , TRP B:413 , TRP B:414 , GLN B:415 , THR B:416 , ASP B:500 , ILE B:512 , ARG B:515 , ARG B:526 , HOH B:2005 , HOH B:2023 , HOH B:2030 , HOH B:2104 , HOH B:2111
BINDING SITE FOR RESIDUE PRX B 998
09
AC9
SOFTWARE
VAL B:161 , ILE B:162 , PHE B:163 , PHE B:166 , TYR B:263 , GLY B:308 , HOH B:1834
BINDING SITE FOR RESIDUE EDO B 1800
10
BC1
SOFTWARE
VAL A:161 , ILE A:162 , PHE A:163 , PHE A:166 , TYR A:263 , GLY A:308
BINDING SITE FOR RESIDUE EDO A 1801
11
BC2
SOFTWARE
GLU A:41 , GLN A:42 , ILE A:45 , HOH A:1891 , HOH A:1996
BINDING SITE FOR RESIDUE EDO A 1802
12
BC3
SOFTWARE
GLY A:164 , GLY A:165 , PHE A:166 , SER A:167 , ILE A:196 , ASN A:201 , PRO A:589 , HOH A:2035
BINDING SITE FOR RESIDUE EDO A 1803
13
BC4
SOFTWARE
VAL B:190 , GLY B:193 , ARG B:194 , SER B:195
BINDING SITE FOR RESIDUE EDO B 1804
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMP_BINDING (A:261-272,B:261-272)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMP_BINDING
PS00455
Putative AMP-binding domain signature.
ACSA_SALTY
261-272
2
A:261-272
B:261-272
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1pg4a_ (A:)
1b: SCOP_d1pg4b_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
Acetyl-CoA synthetase-like
(38)
Protein domain
:
Acetyl-CoA synthetase
(9)
Salmonella enterica [TaxId: 28901]
(2)
1a
d1pg4a_
A:
1b
d1pg4b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1pg4A02 (A:518-647)
1b: CATH_1pg4B02 (B:518-647)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.30, no name defined]
(30)
Salmonella enterica. Organism_taxid: 28901.
(2)
1a
1pg4A02
A:518-647
1b
1pg4B02
B:518-647
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_AMP_binding_1pg4B01 (B:109-547)
1b: PFAM_AMP_binding_1pg4B02 (B:109-547)
2a: PFAM_DUF3448_1pg4B03 (B:17-102)
2b: PFAM_DUF3448_1pg4B04 (B:17-102)
3a: PFAM_DUF4009_1pg4B05 (B:590-634)
3b: PFAM_DUF4009_1pg4B06 (B:590-634)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ANL
(32)
Family
:
AMP-binding
(32)
Salmonella typhimurium
(7)
1a
AMP-binding-1pg4B01
B:109-547
1b
AMP-binding-1pg4B02
B:109-547
Clan
:
no clan defined [family: DUF3448]
(8)
Family
:
DUF3448
(8)
Salmonella typhimurium
(7)
2a
DUF3448-1pg4B03
B:17-102
2b
DUF3448-1pg4B04
B:17-102
Clan
:
no clan defined [family: DUF4009]
(14)
Family
:
DUF4009
(14)
Salmonella typhimurium
(7)
3a
DUF4009-1pg4B05
B:590-634
3b
DUF4009-1pg4B06
B:590-634
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (225 KB)
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