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1PFX
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
PORCINE FACTOR IXA
Authors
:
H. Brandstetter, M. Bauer, R. Huber, P. Lollar, W. Bode
Date
:
19 Jul 95 (Deposition) - 17 Aug 96 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : C,L
Biol. Unit 1: C,L (1x)
Keywords
:
Hemophilia/Egf, Blood Coagulation, Plasma, Serine Protease, Calcium- Binding, Hydrolase, Glycoprotein, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Brandstetter, M. Bauer, R. Huber, P. Lollar, W. Bode
X-Ray Structure Of Clotting Factor Ixa: Active Site And Module Structure Related To Xase Activity And Hemophilia B.
Proc. Natl. Acad. Sci. Usa V. 92 9796 1995
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMIN... (0G6a)
2a: (3S)-3-HYDROXY-L-ASPARTIC ACID (BHDa)
3a: GAMMA-CARBOXY-GLUTAMIC ACID (CGUa)
3b: GAMMA-CARBOXY-GLUTAMIC ACID (CGUb)
3c: GAMMA-CARBOXY-GLUTAMIC ACID (CGUc)
3d: GAMMA-CARBOXY-GLUTAMIC ACID (CGUd)
3e: GAMMA-CARBOXY-GLUTAMIC ACID (CGUe)
3f: GAMMA-CARBOXY-GLUTAMIC ACID (CGUf)
3g: GAMMA-CARBOXY-GLUTAMIC ACID (CGUg)
3h: GAMMA-CARBOXY-GLUTAMIC ACID (CGUh)
3i: GAMMA-CARBOXY-GLUTAMIC ACID (CGUi)
3j: GAMMA-CARBOXY-GLUTAMIC ACID (CGUj)
3k: GAMMA-CARBOXY-GLUTAMIC ACID (CGUk)
3l: GAMMA-CARBOXY-GLUTAMIC ACID (CGUl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0G6
1
Ligand/Ion
D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2
BHD
1
Mod. Amino Acid
(3S)-3-HYDROXY-L-ASPARTIC ACID
3
CGU
12
Mod. Amino Acid
GAMMA-CARBOXY-GLUTAMIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS C:57 , TYR C:99 , PHE C:174 , ASP C:189 , SER C:190 , CYS C:191 , GLN C:192 , GLY C:193 , SER C:195 , SER C:214 , TRP C:215 , GLY C:216 , GLU C:219 , ILE L:66
BINDING SITE FOR RESIDUE 0G6 C 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(10, 10)
Info
All PROSITE Patterns/Profiles
01: GLA_2 (L:2-47)
02: GLA_1 (L:17-42)
03: EGF_3 (L:47-83)
04: EGF_CA (L:47-71)
05: ASX_HYDROXYL (L:62-73)
06: EGF_1 (L:71-82)
07: EGF_2 (L:71-82|L:109-124)
08: TRYPSIN_DOM (C:16-237)
09: TRYPSIN_HIS (C:53-58)
10: TRYPSIN_SER (C:189-200)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLA_2
PS50998
Gla domain profile.
FA9_PIG
2-48
1
L:2-47
2
GLA_1
PS00011
Vitamin K-dependent carboxylation domain.
FA9_PIG
18-43
1
L:17-42
3
EGF_3
PS50026
EGF-like domain profile.
FA9_PIG
48-84
1
L:47-83
4
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
FA9_PIG
48-72
1
L:47-71
5
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
FA9_PIG
63-74
1
L:62-73
6
EGF_1
PS00022
EGF-like domain signature 1.
FA9_PIG
72-83
1
L:71-82
7
EGF_2
PS01186
EGF-like domain signature 2.
FA9_PIG
72-83
110-125
2
L:71-82
L:109-124
8
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA9_PIG
183-409
1
C:16-237
9
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA9_PIG
219-224
1
C:53-58
10
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA9_PIG
361-372
1
C:189-200
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1pfxc_ (C:)
2a: SCOP_d1pfxl3 (L:1-46)
3a: SCOP_d1pfxl1 (L:47-86)
3b: SCOP_d1pfxl2 (L:87-146)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Coagulation factor IXa, protease domain
(7)
Pig (Sus scrofa) [TaxId: 9823]
(2)
1a
d1pfxc_
C:
Class
:
Small proteins
(3458)
Fold
:
GLA-domain
(44)
Superfamily
:
GLA-domain
(44)
Family
:
GLA-domain
(37)
Protein domain
:
Coagulation factor IX (IXa)
(7)
Pig (Sus scrofa) [TaxId: 9823]
(1)
2a
d1pfxl3
L:1-46
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Factor IX (IXa)
(8)
Pig (Sus scrofa) [TaxId: 9823]
(2)
3a
d1pfxl1
L:47-86
3b
d1pfxl2
L:87-146
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CATH Domains
(3, 5)
Info
all CATH domains
1a: CATH_1pfxL01 (L:1-46)
2a: CATH_1pfxC01 (C:16-27,C:121-232)
2b: CATH_1pfxC02 (C:28-120,C:233-245)
3a: CATH_1pfxL03 (L:87-127)
3b: CATH_1pfxL02 (L:47-86)
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)
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)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Coagulation Factor IX
(11)
Homologous Superfamily
:
Coagulation Factor IX
(11)
Pig (Sus scrofa)
(1)
1a
1pfxL01
L:1-46
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Pig (Sus scrofa)
(115)
2a
1pfxC01
C:16-27,C:121-232
2b
1pfxC02
C:28-120,C:233-245
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Pig (Sus scrofa)
(3)
3a
1pfxL03
L:87-127
3b
1pfxL02
L:47-86
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_EGF_1pfxL01 (L:51-81)
2a: PFAM_Trypsin_1pfxC01 (C:16-237)
3a: PFAM_Gla_1pfxL02 (L:9-47)
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Clans
(
)
(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF
(31)
Sus scrofa (Pig)
(2)
1a
EGF-1pfxL01
L:51-81
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Sus scrofa (Pig)
(47)
2a
Trypsin-1pfxC01
C:16-237
Clan
:
no clan defined [family: Gla]
(24)
Family
:
Gla
(24)
Sus scrofa (Pig)
(2)
3a
Gla-1pfxL02
L:9-47
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Chain L
Asymmetric Unit 1
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