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1PF6
Theor. Model
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(1)
Title
:
IN SILICO STRUCTURE OF PROTEIN KINASE 9
Authors
:
S. C. Mallena, J. A. R. P. Sarma, M. B. Kanchana, G. Rambabu
Date
:
24 May 03 (Deposition) - 03 Jun 03 (Release) - 03 Jun 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Dr. Mallena, Atp-Binding, Nuclear Protein, Polymorphism, Insight Ii
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Mallena, J. A. R. P. Sarma, M. B. Kanchana, G. Rambabu
In Silico Structrue Of Protein Kinase 9
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041982 (F59L, chain A, )
2: VAR_013456 (A231A, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041982
F
59
L
CDK9_HUMAN
Polymorphism
55640715
A
F
59
L
2
UniProt
VAR_013456
G
231
A
CDK9_HUMAN
Polymorphism
---
A
A
231
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:25-48)
2: PROTEIN_KINASE_ST (A:145-157)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK9_HUMAN
25-48
1
A:25-48
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK9_HUMAN
145-157
1
A:145-157
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Exons
(7, 7)
Info
All Exons
Exon 1.1c (A:1-31)
Exon 1.2a (A:31-58)
Exon 1.3c (A:59-89)
Exon 1.4 (A:89-144)
Exon 1.5b (A:145-202)
Exon 1.6c (A:202-251)
Exon 1.7c (A:252-372)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.2a
3: Boundary 1.2a/1.3c
4: Boundary 1.3c/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/1.6c
7: Boundary 1.6c/1.7c
8: Boundary 1.7c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000373264
1c
ENSE00001251705
chr9:
130548328-130548519
192
CDK9_HUMAN
1-31
31
1
A:1-31
31
1.2a
ENST00000373264
2a
ENSE00000984615
chr9:
130548980-130549061
82
CDK9_HUMAN
31-58
28
1
A:31-58
28
1.3c
ENST00000373264
3c
ENSE00000984616
chr9:
130549797-130549887
91
CDK9_HUMAN
59-89
31
1
A:59-89
31
1.4
ENST00000373264
4
ENSE00000984617
chr9:
130550226-130550392
167
CDK9_HUMAN
89-144
56
1
A:89-144
56
1.5b
ENST00000373264
5b
ENSE00000984618
chr9:
130550493-130550664
172
CDK9_HUMAN
145-202
58
1
A:145-202
58
1.6c
ENST00000373264
6c
ENSE00000984619
chr9:
130550823-130550971
149
CDK9_HUMAN
202-251
50
1
A:202-251
50
1.7c
ENST00000373264
7c
ENSE00001814236
chr9:
130551457-130553066
1610
CDK9_HUMAN
252-372
121
1
A:252-372
121
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SCOP Domains
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CATH Domains
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Pfam Domains
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