PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1PEI
Asym. Unit
Info
Asym.Unit (57 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
NMR STRUCTURE OF THE MEMBRANE-BINDING DOMAIN OF CTP PHOSPHOCHOLINE CYTIDYLYLTRANSFERASE, 10 STRUCTURES
Authors
:
S. J. Dunne, R. B. Cornell, J. E. Johnson, N. R. Glover, A. S. Tracey
Date
:
10 Jun 96 (Deposition) - 07 Dec 96 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Transferase, Nucleotidyltransferase, Repeat, Phospholipid Biosynthesis, Membrane, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Dunne, R. B. Cornell, J. E. Johnson, N. R. Glover, A. S. Tracey
Structure Of The Membrane Binding Domain Of Ctp:Phosphocholine Cytidylyltransferase.
Biochemistry V. 35 11975 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:268
BINDING SITE FOR RESIDUE ACE A 266
2
AC2
SOFTWARE
SER A:288
BINDING SITE FOR RESIDUE NH2 A 289
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.8 (A:266-289)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000002403
1
ENSRNOE00000016700
chr11:
70173684-70173594
91
PCY1A_RAT
-
0
0
-
-
1.2
ENSRNOT00000002403
2
ENSRNOE00000016703
chr11:
70154940-70154814
127
PCY1A_RAT
1-39
39
0
-
-
1.3
ENSRNOT00000002403
3
ENSRNOE00000016704
chr11:
70151153-70151054
100
PCY1A_RAT
40-73
34
0
-
-
1.4
ENSRNOT00000002403
4
ENSRNOE00000016705
chr11:
70143003-70142887
117
PCY1A_RAT
73-112
40
0
-
-
1.5
ENSRNOT00000002403
5
ENSRNOE00000016706
chr11:
70141771-70141620
152
PCY1A_RAT
112-162
51
0
-
-
1.6
ENSRNOT00000002403
6
ENSRNOE00000016707
chr11:
70138993-70138915
79
PCY1A_RAT
163-189
27
0
-
-
1.7
ENSRNOT00000002403
7
ENSRNOE00000016708
chr11:
70138480-70138338
143
PCY1A_RAT
189-236
48
0
-
-
1.8
ENSRNOT00000002403
8
ENSRNOE00000016713
chr11:
70135332-70135144
189
PCY1A_RAT
237-299
63
1
A:266-289
24
1.9
ENSRNOT00000002403
9
ENSRNOE00000016717
chr11:
70133875-70130574
3302
PCY1A_RAT
300-367
68
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1peia_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Peptides
(792)
Fold
:
Phosphocholine cytidylyltransferase membrane-binding peptides
(2)
Superfamily
:
Phosphocholine cytidylyltransferase membrane-binding peptides
(2)
Family
:
Phosphocholine cytidylyltransferase membrane-binding peptides
(2)
Protein domain
:
Phosphocholine cytidylyltransferase membrane-binding peptides
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1peia_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (57 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1PEI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help