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1PDH
Asym. Unit
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Asym.Unit (76 KB)
Biol.Unit 1 (141 KB)
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Title
:
CRYSTAL STRUCTURE OF P-HYDROXYBENZOATE HYDROXYLASE RECONSTITUTED WITH THE MODIFIED FAD PRESENT IN ALCOHOL OXIDASE FROM METHYLOTROPHIC YEASTS: EVIDENCE FOR AN ARABINOFLAVIN
Authors
:
H. A. Schreuder, M. H. M. Eppink, W. J. H. Van Berkel
Date
:
01 Dec 94 (Deposition) - 31 Mar 95 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. J. Van Berkel, M. H. Eppink, H. A. Schreuder
Crystal Structure Of P-Hydroxybenzoate Hydroxylase Reconstituted With The Modified Fad Present In Alcohol Oxidase From Methylotrophic Yeasts: Evidence For An Arabinoflavin.
Protein Sci. V. 3 2245 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ARABINO-FLAVIN-ADENINE DINUCLEOTID... (FASa)
2a: P-HYDROXYBENZOIC ACID (PHBa)
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No.
Name
Count
Type
Full Name
1
FAS
1
Ligand/Ion
ARABINO-FLAVIN-ADENINE DINUCLEOTIDE
2
PHB
1
Ligand/Ion
P-HYDROXYBENZOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:9 , GLY A:11 , PRO A:12 , SER A:13 , GLU A:32 , ARG A:33 , ARG A:42 , ARG A:44 , ALA A:45 , GLN A:102 , CYS A:158 , ASP A:159 , GLY A:160 , GLY A:163 , ILE A:164 , TYR A:222 , GLY A:285 , ASP A:286 , PRO A:293 , ALA A:296 , GLY A:298 , LEU A:299 , PHB A:396 , HOH A:399 , HOH A:400 , HOH A:401 , HOH A:407 , HOH A:493 , HOH A:495 , HOH A:501 , HOH A:505 , HOH A:506 , HOH A:545 , HOH A:555 , HOH A:622
BINDING SITE FOR RESIDUE FAS A 395
2
AC2
SOFTWARE
ARG A:44 , TRP A:185 , TYR A:201 , LEU A:210 , SER A:212 , ARG A:214 , TYR A:222 , PRO A:293 , THR A:294 , ALA A:296 , FAS A:395
BINDING SITE FOR RESIDUE PHB A 396
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1pdha2 (A:174-275)
2a: SCOP_d1pdha1 (A:1-173,A:276-391)
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Protein Domains
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)
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
PHBH-like
(39)
Protein domain
:
p-Hydroxybenzoate hydroxylase (PHBH)
(35)
Pseudomonas fluorescens [TaxId: 294]
(17)
1a
d1pdha2
A:174-275
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
p-Hydroxybenzoate hydroxylase, PHBH
(35)
Pseudomonas fluorescens [TaxId: 294]
(17)
2a
d1pdha1
A:1-173,A:276-391
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1pdhA02 (A:73-95,A:181-268,A:352-388)
2a: CATH_1pdhA01 (A:1-72,A:96-180,A:269-351)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Pseudomonas fluorescens. Organism_taxid: 294
(8)
1a
1pdhA02
A:73-95,A:181-268,A:352-388
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Pseudomonas fluorescens. Organism_taxid: 294
(9)
2a
1pdhA01
A:1-72,A:96-180,A:269-351
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_FAD_binding_3_1pdhA01 (A:2-343)
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Clan
:
NADP_Rossmann
(1239)
Family
:
FAD_binding_3
(21)
Pseudomonas fluorescens
(7)
1a
FAD_binding_3-1pdhA01
A:2-343
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Asymmetric Unit 1
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