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1PCU
Theor. Model
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Theoretical Model (76 KB)
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(1)
Title
:
MODELS OF THE SERINE PROTEASE DOMAIN OF THE HUMAN ANTITHROMBOTIC PLASMA FACTOR ACTIVATED PROTEIN C AND ITS ZYMOGEN
Authors
:
C. L. Fisher, J. S. Greengard, J. H. Griffin
Date
:
20 Dec 93 (Deposition) - 31 May 94 (Release) - 31 May 94 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,_
#
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Serine Proteinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. L. Fisher, J. S. Greengard, J. H. Griffin
Models Of The Serine Protease Domain Of The Human Antithrombotic Plasma Factor Activated Protein C And Its Zymogen.
Protein Sci. V. 3 588 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: CALCIUM ION (CAa)
3a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
CA
1
Ligand/Ion
CALCIUM ION
3
NH2
1
Mod. Amino Acid
AMINO GROUP
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: CAT (not defined)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
CAT
not defined
HIS A:211 , ASP A:257 , SER A:360
[
close Site info
]
SAPs(SNPs)/Variants
(49, 49)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006660 (A136P, chain A, )
02: VAR_006661 (C141R, chain A, )
03: VAR_006662 (R147W, chain A, )
04: VAR_006663 (R152C, chain A, )
05: VAR_006664 (P168L, chain A, )
06: VAR_006666 (R169Q, chain A, )
07: VAR_006665 (R169W, chain A, )
08: VAR_006667 (R178P, chain A, )
09: VAR_006669 (R178Q, chain A, )
10: VAR_006668 (R178W, chain A, )
11: VAR_006670 (Q184H, chain A, )
12: VAR_006671 (I201T, chain A, )
13: VAR_006672 (H202Y, chain A, )
14: VAR_006673 (H211Q, chain A, )
15: VAR_006674 (L223F, chain A, )
16: VAR_006675 (R229Q, chain A, )
17: VAR_006676 (R229W, chain A, )
18: VAR_006677 (R230C, chain A, )
19: VAR_006679 (P247L, chain A, )
20: VAR_006680 (S252N, chain A, )
21: VAR_006681 (N256D, chain A, )
22: VAR_006682 (A259T, chain A, )
23: VAR_006683 (A259V, chain A, )
24: VAR_006684 (A267T, chain A, )
25: VAR_006685 (S270L, chain A, )
26: VAR_006686 (S270P, chain A, )
27: VAR_006687 (P279L, chain A, )
28: VAR_006688 (G282R, chain A, )
29: VAR_006689 (R286C, chain A, )
30: VAR_006690 (R286H, chain A, )
31: VAR_006691 (G292S, chain A, )
32: VAR_006692 (T298M, chain A, )
33: VAR_006693 (G301D, chain A, )
34: VAR_006695 (V325A, chain A, )
35: VAR_006696 (P327L, chain A, )
36: VAR_006697 (M343I, chain A, )
37: VAR_006698 (A346T, chain A, )
38: VAR_006699 (A346V, chain A, )
39: VAR_006700 (G350R, chain A, )
40: VAR_006701 (R352W, chain A, )
41: VAR_006702 (D359N, chain A, )
42: VAR_006703 (G376D, chain A, )
43: VAR_006704 (G381S, chain A, )
44: VAR_006705 (C384Y, chain A, )
45: VAR_006706 (G391S, chain A, )
46: VAR_006707 (T394N, chain A, )
47: VAR_006708 (Y399H, chain A, )
48: VAR_006709 (W402C, chain A, )
49: VAR_006710 (I403M, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006660
A
178
P
PROC_HUMAN
Disease (THPH4)
---
A
A
136
P
02
UniProt
VAR_006661
C
183
R
PROC_HUMAN
Unclassified
---
A
C
141
R
03
UniProt
VAR_006662
R
189
W
PROC_HUMAN
Polymorphism
146922325
A
R
147
W
04
UniProt
VAR_006663
R
194
C
PROC_HUMAN
Unclassified
---
A
R
152
C
05
UniProt
VAR_006664
P
210
L
PROC_HUMAN
Disease (THPH3)
---
A
P
168
L
06
UniProt
VAR_006666
R
211
Q
PROC_HUMAN
Polymorphism
28933987
A
R
169
Q
07
UniProt
VAR_006665
R
211
W
PROC_HUMAN
Disease (THPH3)
28933986
A
R
169
W
08
UniProt
VAR_006667
R
220
P
PROC_HUMAN
Unclassified
---
A
R
178
P
09
UniProt
VAR_006669
R
220
Q
PROC_HUMAN
Disease (THPH3)
---
A
R
178
Q
10
UniProt
VAR_006668
R
220
W
PROC_HUMAN
Disease (THPH3)
---
A
R
178
W
11
UniProt
VAR_006670
Q
226
H
PROC_HUMAN
Unclassified
---
A
Q
184
H
12
UniProt
VAR_006671
I
243
T
PROC_HUMAN
Disease (THPH3)
---
A
I
201
T
13
UniProt
VAR_006672
H
244
Y
PROC_HUMAN
Unclassified
---
A
H
202
Y
14
UniProt
VAR_006673
H
253
Q
PROC_HUMAN
Unclassified
---
A
H
211
Q
15
UniProt
VAR_006674
L
265
F
PROC_HUMAN
Unclassified
---
A
L
223
F
16
UniProt
VAR_006675
R
271
Q
PROC_HUMAN
Unclassified
---
A
R
229
Q
17
UniProt
VAR_006676
R
271
W
PROC_HUMAN
Unclassified
---
A
R
229
W
18
UniProt
VAR_006677
R
272
C
PROC_HUMAN
Disease (THPH3)
---
A
R
230
C
19
UniProt
VAR_006679
P
289
L
PROC_HUMAN
Disease (THPH4)
---
A
P
247
L
20
UniProt
VAR_006680
S
294
N
PROC_HUMAN
Unclassified
---
A
S
252
N
21
UniProt
VAR_006681
N
298
D
PROC_HUMAN
Unclassified
---
A
N
256
D
22
UniProt
VAR_006682
A
301
T
PROC_HUMAN
Unclassified
---
A
A
259
T
23
UniProt
VAR_006683
A
301
V
PROC_HUMAN
Unclassified
---
A
A
259
V
24
UniProt
VAR_006684
A
309
T
PROC_HUMAN
Unclassified
---
A
A
267
T
25
UniProt
VAR_006685
S
312
L
PROC_HUMAN
Unclassified
---
A
S
270
L
26
UniProt
VAR_006686
S
312
P
PROC_HUMAN
Unclassified
---
A
S
270
P
27
UniProt
VAR_006687
P
321
L
PROC_HUMAN
Disease (THPH3)
---
A
P
279
L
28
UniProt
VAR_006688
G
324
R
PROC_HUMAN
Disease (THPH3)
---
A
G
282
R
29
UniProt
VAR_006689
R
328
C
PROC_HUMAN
Disease (THPH3)
---
A
R
286
C
30
UniProt
VAR_006690
R
328
H
PROC_HUMAN
Disease (THPH4)
---
A
R
286
H
31
UniProt
VAR_006691
G
334
S
PROC_HUMAN
Disease (THPH4)
---
A
G
292
S
32
UniProt
VAR_006692
T
340
M
PROC_HUMAN
Disease (THPH3)
---
A
T
298
M
33
UniProt
VAR_006693
G
343
D
PROC_HUMAN
Unclassified
---
A
G
301
D
34
UniProt
VAR_006695
V
367
A
PROC_HUMAN
Disease (THPH4)
---
A
V
325
A
35
UniProt
VAR_006696
P
369
L
PROC_HUMAN
Disease (THPH3)
---
A
P
327
L
36
UniProt
VAR_006697
M
385
I
PROC_HUMAN
Unclassified
---
A
M
343
I
37
UniProt
VAR_006698
A
388
T
PROC_HUMAN
Unclassified
---
A
A
346
T
38
UniProt
VAR_006699
A
388
V
PROC_HUMAN
Unclassified
---
A
A
346
V
39
UniProt
VAR_006700
G
392
R
PROC_HUMAN
Disease (THPH3)
---
A
G
350
R
40
UniProt
VAR_006701
R
394
W
PROC_HUMAN
Unclassified
---
A
R
352
W
41
UniProt
VAR_006702
D
401
N
PROC_HUMAN
Disease (THPH3)
---
A
D
359
N
42
UniProt
VAR_006703
G
418
D
PROC_HUMAN
Disease (THPH4)
---
A
G
376
D
43
UniProt
VAR_006704
G
423
S
PROC_HUMAN
Disease (THPH3)
---
A
G
381
S
44
UniProt
VAR_006705
C
426
Y
PROC_HUMAN
Disease (THPH3)
---
A
C
384
Y
45
UniProt
VAR_006706
G
433
S
PROC_HUMAN
Unclassified
---
A
G
391
S
46
UniProt
VAR_006707
T
436
N
PROC_HUMAN
Disease (THPH3)
---
A
T
394
N
47
UniProt
VAR_006708
Y
441
H
PROC_HUMAN
Disease (THPH3)
---
A
Y
399
H
48
UniProt
VAR_006709
W
444
C
PROC_HUMAN
Disease (THPH3)
---
A
W
402
C
49
UniProt
VAR_006710
I
445
M
PROC_HUMAN
Unclassified
---
A
I
403
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:170-408)
2: TRYPSIN_HIS (A:207-212)
3: TRYPSIN_SER (A:354-365)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
PROC_HUMAN
212-450
1
A:170-408
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
PROC_HUMAN
249-254
1
A:207-212
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
PROC_HUMAN
396-407
1
A:354-365
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.4k (A:132-137)
Exon 1.5b (A:137-184)
Exon 1.6 (A:185-224)
Exon 1.7d (A:224-409)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4h/1.4k
2: Boundary 1.4k/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7d
5: Boundary 1.7d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000234071
1a
ENSE00001747079
chr2:
128176003-128176068
66
PROC_HUMAN
-
0
0
-
-
1.2e
ENST00000234071
2e
ENSE00000857263
chr2:
128177498-128177588
91
PROC_HUMAN
1-24
24
0
-
-
1.3a
ENST00000234071
3a
ENSE00001019166
chr2:
128178859-128179025
167
PROC_HUMAN
24-79
56
0
-
-
1.4a
ENST00000234071
4a
ENSE00001657237
chr2:
128180493-128180517
25
PROC_HUMAN
80-88
9
0
-
-
1.4h
ENST00000234071
4h
ENSE00000775732
chr2:
128180610-128180747
138
PROC_HUMAN
88-134
47
0
-
-
1.4k
ENST00000234071
4k
ENSE00001019181
chr2:
128180850-128180984
135
PROC_HUMAN
134-179
46
1
A:132-137
6
1.5b
ENST00000234071
5b
ENSE00000775730
chr2:
128183661-128183803
143
PROC_HUMAN
179-226
48
1
A:137-184
48
1.6
ENST00000234071
6
ENSE00000775729
chr2:
128184681-128184798
118
PROC_HUMAN
227-266
40
1
A:185-224
40
1.7d
ENST00000234071
7d
ENSE00001853552
chr2:
128185933-128186822
890
PROC_HUMAN
266-461
196
1
A:224-409
186
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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Chain A
Asymmetric Unit 1
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