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1PAU
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (146 KB)
Biol.Unit 3 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF APOPAIN WITH THE TETRAPEPTIDE ALDEHYDE INHIBITOR AC-DEVD-CHO
Authors
:
J. Rotonda, J. W. Becker
Date
:
06 Jun 96 (Deposition) - 07 Jul 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (4x)
Biol. Unit 3: A,B,C (2x)
Keywords
:
Cysteine Protease, Caspase-3, Apopain, Cpp32, Yama, Protease- Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rotonda, D. W. Nicholson, K. M. Fazil, M. Gallant, Y. Gareau, M. Labelle, E. P. Peterson, D. M. Rasper, R. Ruel, J. P. Vaillancourt, N. A. Thornberry, J. W. Becker
The Three-Dimensional Structure Of Apopain/Cpp32, A Key Mediator Of Apoptosis.
Nat. Struct. Biol. V. 3 619 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: (3S)-3-AMINO-4-HYDROXYBUTANOIC ACI... (ASJa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
ASJ
1
Mod. Amino Acid
(3S)-3-AMINO-4-HYDROXYBUTANOIC ACID
[
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]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: S1 (UNKNOWN)
3: S2 (UNKNOWN)
4: S3 (UNKNOWN)
5: S4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:175A , ARG A:179 , HIS A:237 , GLN A:283 , CYS A:285 , TYR B:338 , SER B:339 , TRP B:340 , ARG B:341 , ASN B:342 , SER B:343 , SER B:381A , PHE B:381B , HOH B:626 , HOH C:619
BINDING SITE FOR CHAIN C OF ACE-ASP-GLU-VAL-ASA
2
S1
UNKNOWN
ARG A:179 , SER A:236 , HIS A:237 , GLY A:238 , GLN A:283 , ALA A:284 , CYS A:285 , SER B:339 , TRP B:340 , ARG B:341
INHIBITOR BINDING SUB-SITE S1.
3
S2
UNKNOWN
CYS A:285 , TYR B:338 , SER B:339 , TRP B:340 , ARG B:341 , PHE B:381H
INHIBITOR BINDING SUB-SITE S2.
4
S3
UNKNOWN
SER A:178 , ARG A:179 , SER A:180 , TRP B:340 , ARG B:341 , SER B:343
INHIBITOR BINDING SUB-SITE S3.
5
S4
UNKNOWN
TRP B:340 , ARG B:341 , ASN B:342 , GLY B:346 , SER B:347 , TRP B:348 , SER B:381A , PHE B:381B
INHIBITOR BINDING SUB-SITE S4.
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001401 (E324D, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001401
E
190
D
CASP3_HUMAN
Polymorphism
1049210
B
E
324
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:162-289)
2: CASPASE_HIS (A:224-238)
3: CASPASE_CYS (A:276-287)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP3_HUMAN
43-167
1
A:162-289
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP3_HUMAN
108-122
1
A:224-238
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP3_HUMAN
154-165
1
A:276-287
[
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]
Exons
(5, 6)
Info
All Exons
Exon 1.6 (A:150-175C (gaps) | -)
Exon 1.7 (A:175C-218 | -)
Exon 1.8b (A:218-283 (gaps) | -)
Exon 1.9 (A:284-295 | B:320-336)
Exon 1.10d (- | B:336-401 (gaps))
View:
Select:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8b
4: Boundary 1.8b/1.9
5: Boundary 1.9/1.10d
6: Boundary 1.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308394
1b
ENSE00001083267
chr4:
185570629-185570549
81
CASP3_HUMAN
-
0
0
-
-
1.2b
ENST00000308394
2b
ENSE00001215704
chr4:
185569785-185569619
167
CASP3_HUMAN
-
0
0
-
-
1.5
ENST00000308394
5
ENSE00001623195
chr4:
185559622-185559555
68
CASP3_HUMAN
1-18
18
0
-
-
1.6
ENST00000308394
6
ENSE00001083265
chr4:
185556572-185556448
125
CASP3_HUMAN
18-60
43
1
A:150-175C (gaps)
-
31
-
1.7
ENST00000308394
7
ENSE00001083266
chr4:
185553550-185553422
129
CASP3_HUMAN
60-103
44
1
A:175C-218
-
44
-
1.8b
ENST00000308394
8b
ENSE00001083271
chr4:
185553094-185552919
176
CASP3_HUMAN
103-161
59
1
A:218-283 (gaps)
-
66
-
1.9
ENST00000308394
9
ENSE00001083268
chr4:
185552311-185552191
121
CASP3_HUMAN
162-202
41
2
A:284-295
B:320-336
12
17
1.10d
ENST00000308394
10d
ENSE00001695797
chr4:
185550655-185548850
1806
CASP3_HUMAN
202-277
76
1
-
B:336-401 (gaps)
-
76
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1pau_1 (A:,B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Apopain (caspase-3, cpp32)
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1pau.1
A:,B:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1pauB00 (B:320-401)
2a: CATH_1pauA00 (A:150-295)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Caspase-like
(31)
Human (Homo sapiens)
(31)
1a
1pauB00
B:320-401
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
2a
1pauA00
A:150-295
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_1pauB01 (B:320-400)
1b: PFAM_Peptidase_C14_1pauB02 (B:320-400)
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Clans
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)
Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
1a
Peptidase_C14-1pauB01
B:320-400
1b
Peptidase_C14-1pauB02
B:320-400
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