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1P9U
Biol. Unit 3
Info
Asym.Unit (309 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (104 KB)
Biol.Unit 3 (104 KB)
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(1)
Title
:
CORONAVIRUS MAIN PROTEINASE (3CLPRO) STRUCTURE: BASIS FOR DESIGN OF ANTI-SARS DRUGS
Authors
:
K. Anand, J. Ziebuhr, P. Wadhwani, J. R. Mesters, R. Hilgenfeld
Date
:
12 May 03 (Deposition) - 20 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,G (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F,H (1x)
Keywords
:
Sars-Cov, Hcov, Tgev, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Anand, J. Ziebuhr, P. Wadhwani, J. R. Mesters, R. Hilgenfeld
Coronavirus Main Proteinase (3Clpro) Structure: Basis For Design Of Anti-Sars Drugs
Science V. 300 1763 2003
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLOROMETHANE (0QEa)
1b: CHLOROMETHANE (0QEb)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
2b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
2c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
2d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0QE
1
Mod. Amino Acid
CHLOROMETHANE
2
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR C:239 , GLU C:240 , ARG F:80
BINDING SITE FOR RESIDUE SO4 C 2001
02
AC7
SOFTWARE
HOH B:2172 , ASN E:168 , LEU E:192 , GLU E:193 , GLY E:194 , HOH E:2107 , HOH E:2158
BINDING SITE FOR RESIDUE SO4 E 2007
03
AC9
SOFTWARE
ARG E:130 , ASN E:196 , HOH E:2112 , HOH E:2185 , HOH E:2211
BINDING SITE FOR RESIDUE SO4 E 2009
04
BC1
SOFTWARE
ASN F:168 , LEU F:192 , GLU F:193 , GLY F:194
BINDING SITE FOR RESIDUE SO4 F 2010
05
BC4
SOFTWARE
ARG E:275 , THR E:276 , HOH E:2106 , HOH E:2141
BINDING SITE FOR RESIDUE SO4 E 2013
06
BC7
SOFTWARE
ARG E:61 , LEU E:62 , HIS E:63 , HOH E:2170
BINDING SITE FOR RESIDUE SO4 E 2017
07
BC8
SOFTWARE
GLY E:122 , SER E:123 , ARG F:294
BINDING SITE FOR RESIDUE SO4 E 2018
08
CC4
SOFTWARE
ARG F:61 , LEU F:62 , HIS F:63
BINDING SITE FOR RESIDUE SO4 F 2023
09
CC5
SOFTWARE
ARG F:130 , LYS F:136 , ASN F:196 , HOH F:2077
BINDING SITE FOR RESIDUE SO4 F 2024
10
DC1
SOFTWARE
THR E:47 , HIS E:163 , LEU E:164 , PRO E:188
BINDING SITE FOR RESIDUE MRD E 1004
11
DC2
SOFTWARE
HIS F:41 , THR F:47 , ILE F:51 , PHE F:139 , CYS F:144 , HIS F:162 , HIS F:163 , LEU F:164 , GLU F:165 , LEU F:166 , GLY F:167 , ASP F:186 , GLN F:187 , PRO F:188 , SER F:189 , MET F:190 , GLN F:191
BINDING SITE FOR CHAIN H OF PHQ-VNSTLQ- CHLOROMETHYLKETONE INHIBITOR
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: M_PRO (E:1-299,F:1-300)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1AB_CVPPU
2879-3180
2
-
-
-
-
E:1-299
F:1-300
R1A_CVPPU
2879-3180
2
-
-
-
-
E:1-299
F:1-300
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1p9ua_ (A:)
1b: SCOP_d1p9ue_ (E:)
1c: SCOP_d1p9uf_ (F:)
1d: SCOP_d1p9ub_ (B:)
1e: SCOP_d1p9uc_ (C:)
1f: SCOP_d1p9ud_ (D:)
View:
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Classes
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
Transmissible gastroenteritis virus [TaxId: 11149]
(3)
1a
d1p9ua_
A:
1b
d1p9ue_
E:
1c
d1p9uf_
F:
1d
d1p9ub_
B:
1e
d1p9uc_
C:
1f
d1p9ud_
D:
[
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1p9uA03 (A:197-299)
1b: CATH_1p9uE03 (E:197-299)
1c: CATH_1p9uF03 (F:197-299)
1d: CATH_1p9uB03 (B:197-299)
1e: CATH_1p9uC03 (C:197-299)
1f: CATH_1p9uD03 (D:197-299)
2a: CATH_1p9uA01 (A:14-97)
2b: CATH_1p9uE01 (E:14-97)
2c: CATH_1p9uF01 (F:14-97)
2d: CATH_1p9uA02 (A:98-185)
2e: CATH_1p9uB02 (B:98-185)
2f: CATH_1p9uC02 (C:98-185)
2g: CATH_1p9uD02 (D:98-185)
2h: CATH_1p9uE02 (E:98-185)
2i: CATH_1p9uF02 (F:98-185)
2j: CATH_1p9uB01 (B:14-97)
2k: CATH_1p9uC01 (C:14-97)
2l: CATH_1p9uD01 (D:14-97)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
main proteinase (3clpro) structure, domain 3
(38)
Homologous Superfamily
:
main proteinase (3clpro) structure, domain 3
(38)
Transmissible gastroenteritis virus. Organism_taxid: 11149.
(2)
1a
1p9uA03
A:197-299
1b
1p9uE03
E:197-299
1c
1p9uF03
F:197-299
1d
1p9uB03
B:197-299
1e
1p9uC03
C:197-299
1f
1p9uD03
D:197-299
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Transmissible gastroenteritis virus. Organism_taxid: 11149.
(2)
2a
1p9uA01
A:14-97
2b
1p9uE01
E:14-97
2c
1p9uF01
F:14-97
2d
1p9uA02
A:98-185
2e
1p9uB02
B:98-185
2f
1p9uC02
C:98-185
2g
1p9uD02
D:98-185
2h
1p9uE02
E:98-185
2i
1p9uF02
F:98-185
2j
1p9uB01
B:14-97
2k
1p9uC01
C:14-97
2l
1p9uD01
D:14-97
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain E
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Chain H
Asymmetric Unit 1
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