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1P9U
Biol. Unit 1
Info
Asym.Unit (309 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (104 KB)
Biol.Unit 3 (104 KB)
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(1)
Title
:
CORONAVIRUS MAIN PROTEINASE (3CLPRO) STRUCTURE: BASIS FOR DESIGN OF ANTI-SARS DRUGS
Authors
:
K. Anand, J. Ziebuhr, P. Wadhwani, J. R. Mesters, R. Hilgenfeld
Date
:
12 May 03 (Deposition) - 20 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,G (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F,H (1x)
Keywords
:
Sars-Cov, Hcov, Tgev, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Anand, J. Ziebuhr, P. Wadhwani, J. R. Mesters, R. Hilgenfeld
Coronavirus Main Proteinase (3Clpro) Structure: Basis For Design Of Anti-Sars Drugs
Science V. 300 1763 2003
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CHLOROMETHANE (0QEa)
1b: CHLOROMETHANE (0QEb)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
2b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
2c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
2d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0QE
1
Mod. Amino Acid
CHLOROMETHANE
2
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: DC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ASN A:168 , LEU A:192 , GLU A:193 , GLY A:194 , HOH A:2054
BINDING SITE FOR RESIDUE SO4 A 2003
02
AC4
SOFTWARE
ARG A:130 , LYS A:136 , HOH A:2051
BINDING SITE FOR RESIDUE SO4 A 2004
03
AC6
SOFTWARE
ASN B:168 , LEU B:192 , GLU B:193 , GLY B:194 , HOH B:2154
BINDING SITE FOR RESIDUE SO4 B 2006
04
AC7
SOFTWARE
HOH B:2172 , ASN E:168 , LEU E:192 , GLU E:193 , GLY E:194 , HOH E:2107 , HOH E:2158
BINDING SITE FOR RESIDUE SO4 E 2007
05
BC2
SOFTWARE
GLY A:214 , GLU A:215 , ARG A:216 , TRP A:217
BINDING SITE FOR RESIDUE SO4 A 2011
06
BC9
SOFTWARE
ILE B:37 , PHE B:102
BINDING SITE FOR RESIDUE SO4 B 2019
07
CC2
SOFTWARE
LYS A:103 , SER A:104
BINDING SITE FOR RESIDUE SO4 A 2021
08
CC6
SOFTWARE
ARG A:19 , SER A:21 , VAL A:26 , SER A:66
BINDING SITE FOR RESIDUE SO4 A 2025
09
CC7
SOFTWARE
HIS A:41 , HIS A:163 , GLN A:187 , PRO A:188
BINDING SITE FOR RESIDUE MRD A 1001
10
DC3
SOFTWARE
HIS B:41 , ILE B:51 , PHE B:139 , ILE B:140 , CYS B:144 , HIS B:162 , HIS B:163 , LEU B:164 , GLU B:165 , LEU B:166 , GLY B:167 , ASP B:186 , GLN B:187 , PRO B:188 , SER B:189 , MET B:190 , GLN B:191
BINDING SITE FOR CHAIN G OF PHQ-VNSTLQ- CHLOROMETHYLKETONE INHIBITOR
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:1-299,B:1-300)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1AB_CVPPU
2879-3180
2
A:1-299
B:1-300
-
-
-
-
R1A_CVPPU
2879-3180
2
A:1-299
B:1-300
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1p9ua_ (A:)
1b: SCOP_d1p9ue_ (E:)
1c: SCOP_d1p9uf_ (F:)
1d: SCOP_d1p9ub_ (B:)
1e: SCOP_d1p9uc_ (C:)
1f: SCOP_d1p9ud_ (D:)
View:
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Classes
(
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(
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Folds
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Viral cysteine protease of trypsin fold
(145)
Protein domain
:
Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
(75)
Transmissible gastroenteritis virus [TaxId: 11149]
(3)
1a
d1p9ua_
A:
1b
d1p9ue_
E:
1c
d1p9uf_
F:
1d
d1p9ub_
B:
1e
d1p9uc_
C:
1f
d1p9ud_
D:
[
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1p9uA03 (A:197-299)
1b: CATH_1p9uE03 (E:197-299)
1c: CATH_1p9uF03 (F:197-299)
1d: CATH_1p9uB03 (B:197-299)
1e: CATH_1p9uC03 (C:197-299)
1f: CATH_1p9uD03 (D:197-299)
2a: CATH_1p9uA01 (A:14-97)
2b: CATH_1p9uE01 (E:14-97)
2c: CATH_1p9uF01 (F:14-97)
2d: CATH_1p9uA02 (A:98-185)
2e: CATH_1p9uB02 (B:98-185)
2f: CATH_1p9uC02 (C:98-185)
2g: CATH_1p9uD02 (D:98-185)
2h: CATH_1p9uE02 (E:98-185)
2i: CATH_1p9uF02 (F:98-185)
2j: CATH_1p9uB01 (B:14-97)
2k: CATH_1p9uC01 (C:14-97)
2l: CATH_1p9uD01 (D:14-97)
View:
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Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
main proteinase (3clpro) structure, domain 3
(38)
Homologous Superfamily
:
main proteinase (3clpro) structure, domain 3
(38)
Transmissible gastroenteritis virus. Organism_taxid: 11149.
(2)
1a
1p9uA03
A:197-299
1b
1p9uE03
E:197-299
1c
1p9uF03
F:197-299
1d
1p9uB03
B:197-299
1e
1p9uC03
C:197-299
1f
1p9uD03
D:197-299
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Transmissible gastroenteritis virus. Organism_taxid: 11149.
(2)
2a
1p9uA01
A:14-97
2b
1p9uE01
E:14-97
2c
1p9uF01
F:14-97
2d
1p9uA02
A:98-185
2e
1p9uB02
B:98-185
2f
1p9uC02
C:98-185
2g
1p9uD02
D:98-185
2h
1p9uE02
E:98-185
2i
1p9uF02
F:98-185
2j
1p9uB01
B:14-97
2k
1p9uC01
C:14-97
2l
1p9uD01
D:14-97
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain G
Asymmetric Unit 1
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