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1P9E
Biol. Unit 2
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Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF METHYL PARATHION HYDROLASE FROM PSEUDOMONAS SP WBC-3
Authors
:
Y. Dong, L. Sun, M. Bartlam, Z. Rao, X. Zhang
Date
:
11 May 03 (Deposition) - 25 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Zn Containing, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Dong, L. Sun, M. Bartlam, Z. Rao, X. Zhang
Crystal Structure Analysis Of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3
To Be Published
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:151 , HIS A:152 , ASP A:255 , HIS A:302 , HOH A:608
BINDING SITE FOR RESIDUE ZN A 401
02
AC2
SOFTWARE
HIS A:147 , HIS A:149 , HIS A:234 , ASP A:255 , HOH A:608 , HOH A:772
BINDING SITE FOR RESIDUE ZN A 402
03
AC3
SOFTWARE
ASP B:151 , HIS B:152 , ASP B:255 , HIS B:302 , HOH B:666
BINDING SITE FOR RESIDUE ZN B 1401
04
AC4
SOFTWARE
HIS B:147 , HIS B:149 , HIS B:234 , ASP B:255 , HOH B:609 , HOH B:666
BINDING SITE FOR RESIDUE CD B 1402
05
AC5
SOFTWARE
GLU A:142 , NA A:505 , HOH A:693 , HOH B:694
BINDING SITE FOR RESIDUE K A 501
06
AC6
SOFTWARE
ASP A:172 , HIS A:232 , HOH A:695
BINDING SITE FOR RESIDUE K A 502
07
AC7
SOFTWARE
GLN A:136 , GLU A:138 , HOH A:696
BINDING SITE FOR RESIDUE K A 503
08
AC8
SOFTWARE
ASP A:221 , ASP B:54
BINDING SITE FOR RESIDUE K B 504
09
AC9
SOFTWARE
VAL A:168 , LYS A:214 , K A:501
BINDING SITE FOR RESIDUE NA A 505
10
BC1
SOFTWARE
GLU A:244
BINDING SITE FOR RESIDUE NA A 506
11
BC2
SOFTWARE
GLN B:136 , GLU B:138
BINDING SITE FOR RESIDUE NA B 507
12
BC3
SOFTWARE
LYS B:174 , HIS B:232
BINDING SITE FOR RESIDUE NA B 508
13
BC4
SOFTWARE
ASP B:221 , LYS B:227 , ASP B:290
BINDING SITE FOR RESIDUE NA B 509
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SAPs(SNPs)/Variants
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1p9ea_ (A:)
1b: SCOP_d1p9eb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
Methyl parathion hydrolase
(1)
Protein domain
:
Methyl parathion hydrolase
(1)
Pseudomonas sp. WBC-3 [TaxId: 165468]
(1)
1a
d1p9ea_
A:
1b
d1p9eb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1p9eA00 (A:36-329)
1b: CATH_1p9eB00 (B:36-329)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Metallo-beta-lactamase; Chain A
(92)
Homologous Superfamily
:
Metallo-beta-lactamase, chain A
(92)
Wbc-3 (Pseudomonas sp)
(1)
1a
1p9eA00
A:36-329
1b
1p9eB00
B:36-329
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Pfam Domains
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Asym.Unit (100 KB)
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Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
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