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1P8Z
Biol. Unit 1
Info
Asym.Unit (89 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (164 KB)
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(1)
Title
:
COMPLEX BETWEEN RABBIT MUSCLE ALPHA-ACTIN: HUMAN GELSOLIN RESIDUES VAL26-GLU156
Authors
:
E. Irobi, L. D. Burtnick, R. C. Robinson
Date
:
08 May 03 (Deposition) - 14 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,G
Biol. Unit 1: A,G (1x)
Biol. Unit 2: A,G (2x)
Keywords
:
Linker Between Gelsolin Domain 1 And Domain 2, Structural Protein/Contractile Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Irobi, L. D. Burtnick, D. Urosev, K. Narayan, R. C. Robinson
From The First To The Second Domain Of Gelsolin: A Common Path On The Surface Of Actin?
Febs Lett. V. 552 86 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CD
-1
Ligand/Ion
CADMIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:380
BINDING SITE FOR RESIDUE CD A 1001
2
AC2
SOFTWARE
GLU A:167 , HIS A:173 , ASP G:109 , GLY G:114 , ALA G:116
BINDING SITE FOR RESIDUE CD G 1002
3
AC3
SOFTWARE
GLY G:65 , ASP G:66 , GLU G:97 , VAL G:145
BINDING SITE FOR RESIDUE CA G 1003
4
AC4
SOFTWARE
ASP A:222 , GLU A:276
BINDING SITE FOR RESIDUE CD A 1004
5
AC5
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , LYS A:336 , CD A:1001 , HOH A:1012 , HOH A:1118 , HOH A:1136
BINDING SITE FOR RESIDUE ATP A 380
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024690 (A102T, chain G, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024690
A
129
T
GELS_HUMAN
Polymorphism
2230287
G
A
102
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1p8zg_ (G:)
2a: SCOP_d1p8za1 (A:6-146)
2b: SCOP_d1p8za2 (A:147-370)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
Gelsolin-like
(43)
Protein domain
:
Gelsolin
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d1p8zg_
G:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d1p8za1
A:6-146
2b
d1p8za2
A:147-370
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CATH Domains
(4, 5)
Info
all CATH domains
1a: CATH_1p8zA01 (A:6-34,A:71-134,A:337-370)
1b: CATH_1p8zA03 (A:136-181,A:271-332)
2a: CATH_1p8zG00 (G:26-156)
3a: CATH_1p8zA04 (A:182-267)
4a: CATH_1p8zA02 (A:35-68)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Human (Homo sapiens)
(36)
1a
1p8zA01
A:6-34,A:71-134,A:337-370
1b
1p8zA03
A:136-181,A:271-332
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Human (Homo sapiens)
(36)
2a
1p8zG00
G:26-156
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Human (Homo sapiens)
(29)
3a
1p8zA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Human (Homo sapiens)
(7)
4a
1p8zA02
A:35-68
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Gelsolin_1p8zG01 (G:48-131)
2a: PFAM_Actin_1p8zA01 (A:6-370)
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)
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)
(
)
Clan
:
ADF
(44)
Family
:
Gelsolin
(23)
Homo sapiens (Human)
(13)
1a
Gelsolin-1p8zG01
G:48-131
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
2a
Actin-1p8zA01
A:6-370
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (84 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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