PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1P8Z
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (164 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
COMPLEX BETWEEN RABBIT MUSCLE ALPHA-ACTIN: HUMAN GELSOLIN RESIDUES VAL26-GLU156
Authors
:
E. Irobi, L. D. Burtnick, R. C. Robinson
Date
:
08 May 03 (Deposition) - 14 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,G
Biol. Unit 1: A,G (1x)
Biol. Unit 2: A,G (2x)
Keywords
:
Linker Between Gelsolin Domain 1 And Domain 2, Structural Protein/Contractile Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Irobi, L. D. Burtnick, D. Urosev, K. Narayan, R. C. Robinson
From The First To The Second Domain Of Gelsolin: A Common Path On The Surface Of Actin?
Febs Lett. V. 552 86 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
3a: CADMIUM ION (CDa)
3b: CADMIUM ION (CDb)
3c: CADMIUM ION (CDc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CD
3
Ligand/Ion
CADMIUM ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:380
BINDING SITE FOR RESIDUE CD A 1001
2
AC2
SOFTWARE
GLU A:167 , HIS A:173 , ASP G:109 , GLY G:114 , ALA G:116
BINDING SITE FOR RESIDUE CD G 1002
3
AC3
SOFTWARE
GLY G:65 , ASP G:66 , GLU G:97 , VAL G:145
BINDING SITE FOR RESIDUE CA G 1003
4
AC4
SOFTWARE
ASP A:222 , GLU A:276
BINDING SITE FOR RESIDUE CD A 1004
5
AC5
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , LYS A:336 , CD A:1001 , HOH A:1012 , HOH A:1118 , HOH A:1136
BINDING SITE FOR RESIDUE ATP A 380
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024690 (A102T, chain G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024690
A
129
T
GELS_HUMAN
Polymorphism
2230287
G
A
102
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.16d (G:26-90)
Exon 1.17 (G:90-141)
Exon 1.18b (G:142-156)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.14/1.16d
2: Boundary 1.16d/1.17
3: Boundary 1.17/1.18b
4: Boundary 1.18b/1.18f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.14
ENST00000373818
14
ENSE00001461665
chr9:
124062071-124062283
213
GELS_HUMAN
1-48
48
0
-
-
1.16d
ENST00000373818
16d
ENSE00001725493
chr9:
124064241-124064445
205
GELS_HUMAN
49-117
69
1
G:26-90
65
1.17
ENST00000373818
17
ENSE00001745162
chr9:
124065189-124065343
155
GELS_HUMAN
117-168
52
1
G:90-141
52
1.18b
ENST00000373818
18b
ENSE00001764209
chr9:
124072962-124073123
162
GELS_HUMAN
169-222
54
1
G:142-156
15
1.18f
ENST00000373818
18f
ENSE00001689299
chr9:
124074617-124074766
150
GELS_HUMAN
223-272
50
0
-
-
1.18i
ENST00000373818
18i
ENSE00001727906
chr9:
124076212-124076301
90
GELS_HUMAN
273-302
30
0
-
-
1.19b
ENST00000373818
19b
ENSE00001732099
chr9:
124079364-124079496
133
GELS_HUMAN
303-347
45
0
-
-
1.20
ENST00000373818
20
ENSE00001734404
chr9:
124080684-124080772
89
GELS_HUMAN
347-376
30
0
-
-
1.21a
ENST00000373818
21a
ENSE00001618926
chr9:
124080943-124081158
216
GELS_HUMAN
377-448
72
0
-
-
1.22b
ENST00000373818
22b
ENSE00001591416
chr9:
124083546-124083679
134
GELS_HUMAN
449-493
45
0
-
-
1.23
ENST00000373818
23
ENSE00001735249
chr9:
124086832-124086922
91
GELS_HUMAN
493-523
31
0
-
-
1.24a
ENST00000373818
24a
ENSE00001704432
chr9:
124088790-124088960
171
GELS_HUMAN
524-580
57
0
-
-
1.25
ENST00000373818
25
ENSE00001668309
chr9:
124089586-124089760
175
GELS_HUMAN
581-639
59
0
-
-
1.26b
ENST00000373818
26b
ENSE00001721539
chr9:
124091169-124091293
125
GELS_HUMAN
639-680
42
0
-
-
1.26c
ENST00000373818
26c
ENSE00001771020
chr9:
124091516-124091593
78
GELS_HUMAN
681-706
26
0
-
-
1.27a
ENST00000373818
27a
ENSE00001779366
chr9:
124093666-124093726
61
GELS_HUMAN
707-727
21
0
-
-
1.28d
ENST00000373818
28d
ENSE00001732346
chr9:
124094712-124095120
409
GELS_HUMAN
727-782
56
0
-
-
[
close EXON info
]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1p8zg_ (G:)
2a: SCOP_d1p8za1 (A:6-146)
2b: SCOP_d1p8za2 (A:147-370)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
Gelsolin-like
(43)
Protein domain
:
Gelsolin
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d1p8zg_
G:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d1p8za1
A:6-146
2b
d1p8za2
A:147-370
[
close SCOP info
]
CATH Domains
(4, 5)
Info
all CATH domains
1a: CATH_1p8zA01 (A:6-34,A:71-134,A:337-370)
1b: CATH_1p8zA03 (A:136-181,A:271-332)
2a: CATH_1p8zG00 (G:26-156)
3a: CATH_1p8zA04 (A:182-267)
4a: CATH_1p8zA02 (A:35-68)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Human (Homo sapiens)
(36)
1a
1p8zA01
A:6-34,A:71-134,A:337-370
1b
1p8zA03
A:136-181,A:271-332
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Human (Homo sapiens)
(36)
2a
1p8zG00
G:26-156
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Human (Homo sapiens)
(29)
3a
1p8zA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Human (Homo sapiens)
(7)
4a
1p8zA02
A:35-68
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Gelsolin_1p8zG01 (G:48-131)
2a: PFAM_Actin_1p8zA01 (A:6-370)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ADF
(44)
Family
:
Gelsolin
(23)
Homo sapiens (Human)
(13)
1a
Gelsolin-1p8zG01
G:48-131
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
2a
Actin-1p8zA01
A:6-370
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain G
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (84 KB)
Header - Biol.Unit 1
Biol.Unit 2 (164 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1P8Z
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
