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1P8T
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NOGO-66 RECEPTOR
Authors
:
W. A. Barton, B. P. Liu, D. Tzvetkova, P. D. Jeffrey, A. E. Fournier, D. Sa S. M. Strittmatter, D. B. Nikolov
Date
:
07 May 03 (Deposition) - 20 May 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ngr, Nogo-66, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. A. Barton, B. P. Liu, D. Tzvetkova, P. D. Jeffrey, A. E. Fournier, D. Sah, R. Cate, S. M. Strittmatter, D. B. Nikolov
Structure And Axon Outgrowth Inhibitor Binding Of The Nogo-66 Receptor And Related Proteins
Embo J. V. 22 3291 2003
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:58 , ASN A:82
BINDING SITE FOR RESIDUE NAG A 401
2
AC2
SOFTWARE
ASN A:179
BINDING SITE FOR RESIDUE NDG A 402
[
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_079224 (V53M, chain A, )
02: VAR_079225 (R68H, chain A, )
03: VAR_079154 (R119W, chain A, )
04: VAR_079226 (G141S, chain A, )
05: VAR_079155 (R196H, chain A, )
06: VAR_079227 (R227C, chain A, )
07: VAR_079228 (R227H, chain A, )
08: VAR_079229 (D259N, chain A, )
09: VAR_079230 (V263M, chain A, )
10: VAR_079231 (R292H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_079224
V
53
M
RTN4R_HUMAN
---
145292678
A
V
53
M
02
UniProt
VAR_079225
R
68
H
RTN4R_HUMAN
---
145773589
A
R
68
H
03
UniProt
VAR_079154
R
119
W
RTN4R_HUMAN
---
74315508
A
R
119
W
04
UniProt
VAR_079226
G
141
S
RTN4R_HUMAN
---
760855779
A
G
141
S
05
UniProt
VAR_079155
R
196
H
RTN4R_HUMAN
---
74315509
A
R
196
H
06
UniProt
VAR_079227
R
227
C
RTN4R_HUMAN
---
754793885
A
R
227
C
07
UniProt
VAR_079228
R
227
H
RTN4R_HUMAN
---
576939822
A
R
227
H
08
UniProt
VAR_079229
D
259
N
RTN4R_HUMAN
---
3747073
A
D
259
N
09
UniProt
VAR_079230
V
263
M
RTN4R_HUMAN
---
752810777
A
V
263
M
10
UniProt
VAR_079231
R
292
H
RTN4R_HUMAN
---
---
A
R
292
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LRR (A:82-103|A:106-128|A:155-176|A:179...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
RTN4R_HUMAN
82-103
106-128
155-176
179-200
203-224
227-248
6
A:82-103
A:106-128
A:155-176
A:179-200
A:203-224
A:227-248
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Exons
(1, 1)
Info
All Exons
Exon 1.8e (A:27-311)
View:
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All Exon Boundaries
1: Boundary 1.5a/1.8e
2: Boundary 1.8e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000043402
5a
ENSE00001358408
chr22:
20256054-20255594
461
RTN4R_HUMAN
1-8
8
0
-
-
1.8e
ENST00000043402
8e
ENSE00001557601
chr22:
20230633-20228938
1696
RTN4R_HUMAN
8-473
466
1
A:27-311
285
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1p8ta_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Ngr ectodomain-like
(21)
Protein domain
:
Reticulon 4 receptor (Nogo-66 receptor, Ngr)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1p8ta_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p8tA00 (A:27-311)
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)
(
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)
(
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Human (Homo sapiens)
(26)
1a
1p8tA00
A:27-311
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_LRR_8_1p8tA01 (A:202-261)
1b: PFAM_LRR_8_1p8tA02 (A:202-261)
1c: PFAM_LRR_8_1p8tA03 (A:202-261)
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Clans
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)
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)
(
)
Organisms
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)
(
)
Clan
:
LRR
(77)
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
1a
LRR_8-1p8tA01
A:202-261
1b
LRR_8-1p8tA02
A:202-261
1c
LRR_8-1p8tA03
A:202-261
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (51 KB)
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