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1P8R
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (144 KB)
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(1)
Title
:
STRUCTURAL AND FUNCTIONAL IMPORTANCE OF FIRST-SHELL METAL LIGANDS IN THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE I.
Authors
:
E. Cama, F. A. Emig, D. E. Ash, D. W. Christianson
Date
:
07 May 03 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Hydrolase, Urea Cycle, Arginine Metabolism, Binuclear Manganese Cluster
(Keyword Search:
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Reference
:
E. Cama, F. A. Emig, D. E. Ash, D. W. Christianson
Structural And Functional Importance Of First-Shell Metal Ligands In The Binuclear Manganese Cluster Of Arginase I
Biochemistry V. 42 7748 2003
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: S-2-(BORONOETHYL)-L-CYSTEINE (S2Ca)
3b: S-2-(BORONOETHYL)-L-CYSTEINE (S2Cb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
S2C
2
Ligand/Ion
S-2-(BORONOETHYL)-L-CYSTEINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:158
BINDING SITE FOR RESIDUE CL A 601
02
AC2
SOFTWARE
ASN A:46 , VAL A:47
BINDING SITE FOR RESIDUE CL A 602
03
AC3
SOFTWARE
LYS A:191 , PRO B:20 , GLY B:22
BINDING SITE FOR RESIDUE CL B 603
04
AC4
SOFTWARE
LYS B:39
BINDING SITE FOR RESIDUE CL B 604
05
AC5
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:501 , S2C A:551
BINDING SITE FOR RESIDUE MN A 500
06
AC6
SOFTWARE
GLU A:101 , ASP A:124 , ASP A:128 , ASP A:232 , MN A:500 , S2C A:551
BINDING SITE FOR RESIDUE MN A 501
07
AC7
SOFTWARE
ASP B:124 , HIS B:126 , ASP B:232 , ASP B:234 , MN B:503 , S2C B:552
BINDING SITE FOR RESIDUE MN B 502
08
AC8
SOFTWARE
GLU B:101 , ASP B:124 , ASP B:128 , ASP B:232 , MN B:502 , S2C B:552
BINDING SITE FOR RESIDUE MN B 503
09
AC9
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:128 , ASN A:130 , SER A:137 , HIS A:141 , ASP A:183 , ASP A:232 , ASP A:234 , GLU A:277 , MN A:500 , MN A:501 , HOH A:817 , HOH A:828
BINDING SITE FOR RESIDUE S2C A 551
10
BC1
SOFTWARE
ASP B:124 , HIS B:126 , ASP B:128 , ASN B:130 , SER B:136 , SER B:137 , HIS B:141 , ASP B:183 , ASP B:232 , ASP B:234 , GLU B:277 , MN B:502 , MN B:503 , HOH B:837
BINDING SITE FOR RESIDUE S2C B 552
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:230-251,B:230-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_RAT
230-251
2
A:230-251
B:230-251
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Exons
(8, 16)
Info
All Exons
Exon 1.1 (A:6-19 | B:6-19)
Exon 1.2 (A:20-44 | B:20-44)
Exon 1.3 (A:44-102 | B:44-102)
Exon 1.4 (A:102-155 | B:102-155)
Exon 1.5 (A:156-187 | B:156-187)
Exon 1.6 (A:187-222 | B:187-222)
Exon 1.7 (A:222-268 | B:222-268)
Exon 1.8 (A:268-313 | B:268-313)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017911
1
ENSRNOE00000127362
chr1:
20998894-20999025
132
ARGI1_RAT
1-19
19
2
A:6-19
B:6-19
14
14
1.2
ENSRNOT00000017911
2
ENSRNOE00000127505
chr1:
21003810-21003882
73
ARGI1_RAT
20-44
25
2
A:20-44
B:20-44
25
25
1.3
ENSRNOT00000017911
3
ENSRNOE00000127596
chr1:
21005814-21005988
175
ARGI1_RAT
44-102
59
2
A:44-102
B:44-102
59
59
1.4
ENSRNOT00000017911
4
ENSRNOE00000126918
chr1:
21008032-21008191
160
ARGI1_RAT
102-155
54
2
A:102-155
B:102-155
54
54
1.5
ENSRNOT00000017911
5
ENSRNOE00000126971
chr1:
21009513-21009607
95
ARGI1_RAT
156-187
32
2
A:156-187
B:156-187
32
32
1.6
ENSRNOT00000017911
6
ENSRNOE00000127033
chr1:
21010045-21010149
105
ARGI1_RAT
187-222
36
2
A:187-222
B:187-222
36
36
1.7
ENSRNOT00000017911
7
ENSRNOE00000127086
chr1:
21010337-21010473
137
ARGI1_RAT
222-268
47
2
A:222-268
B:222-268
47
47
1.8
ENSRNOT00000017911
8
ENSRNOE00000127695
chr1:
21010716-21011266
551
ARGI1_RAT
268-323
56
2
A:268-313
B:268-313
46
46
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1p8ra_ (A:)
1b: SCOP_d1p8rb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(34)
1a
d1p8ra_
A:
1b
d1p8rb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1p8rA00 (A:6-313)
1b: CATH_1p8rB00 (B:6-313)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Norway rat (Rattus norvegicus)
(31)
1a
1p8rA00
A:6-313
1b
1p8rB00
B:6-313
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Arginase_1p8rB01 (B:6-305)
1b: PFAM_Arginase_1p8rB02 (B:6-305)
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Clans
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Families
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(
)
Organisms
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)
(
)
Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Rattus norvegicus (Rat)
(19)
1a
Arginase-1p8rB01
B:6-305
1b
Arginase-1p8rB02
B:6-305
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Asym.Unit (102 KB)
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