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1P7H
Asym. Unit
Info
Asym.Unit (217 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
STRUCTURE OF NFAT1 BOUND AS A DIMER TO THE HIV-1 LTR KB ELEMENT
Authors
:
M. J. Giffin, J. C. Stroud, D. L. Bates, K. D. Von Koenig, J. Hardin, L. Chen
Date
:
01 May 03 (Deposition) - 23 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,L,M,N,O
Biol. Unit 1: A,B,L,M (1x)
Biol. Unit 2: C,D,N,O (1x)
Keywords
:
Dna Binding Protein, Transcription Regulation, Activator, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Giffin, J. C. Stroud, D. L. Bates, K. D. Von Koenig, J. Hardin, L. Chen
Structure Of Nfat1 Bound As A Dimer To The Hiv-1 Ltr Kappa B Element
Nat. Struct. Biol. V. 10 800 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051783 (H446R, chain L/M/N/O, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
L/M/N/O
H
446
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 28)
Info
All Exons
Exon 1.4 (L:393-444 | M:393-444 | N:393-444 ...)
Exon 1.5 (L:445-512 | M:445-512 | N:445-512 ...)
Exon 1.6 (L:512-570 | M:512-570 | N:512-570 ...)
Exon 1.7 (L:570-617 | M:570-617 | N:570-617 ...)
Exon 1.8 (L:617-635 | M:617-635 | N:617-635 ...)
Exon 1.9 (L:636-678 | M:636-678 | N:636-678 ...)
Exon 1.10 (L:678-678 | M:678-678 | N:678-678 ...)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.12c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000396009
2
ENSE00001455518
chr20:
50159258-50158909
350
NFAC2_HUMAN
1-44
44
0
-
-
1.3
ENST00000396009
3
ENSE00000662713
chr20:
50140649-50139620
1030
NFAC2_HUMAN
44-387
344
0
-
-
1.4
ENST00000396009
4
ENSE00000662712
chr20:
50133494-50133323
172
NFAC2_HUMAN
387-444
58
4
L:393-444
M:393-444
N:393-444
O:393-444
52
52
52
52
1.5
ENST00000396009
5
ENSE00000662711
chr20:
50092197-50091995
203
NFAC2_HUMAN
445-512
68
4
L:445-512
M:445-512
N:445-512
O:445-512
68
68
68
68
1.6
ENST00000396009
6
ENSE00000662710
chr20:
50090689-50090517
173
NFAC2_HUMAN
512-570
59
4
L:512-570
M:512-570
N:512-570
O:512-570
59
59
59
59
1.7
ENST00000396009
7
ENSE00000662709
chr20:
50071225-50071085
141
NFAC2_HUMAN
570-617
48
4
L:570-617
M:570-617
N:570-617
O:570-617
48
48
48
48
1.8
ENST00000396009
8
ENSE00000662708
chr20:
50052298-50052243
56
NFAC2_HUMAN
617-635
19
4
L:617-635
M:617-635
N:617-635
O:617-635
19
19
19
19
1.9
ENST00000396009
9
ENSE00000662707
chr20:
50051851-50051725
127
NFAC2_HUMAN
636-678
43
4
L:636-678
M:636-678
N:636-678
O:636-678
43
43
43
43
1.10
ENST00000396009
10
ENSE00001455516
chr20:
50049293-50048604
690
NFAC2_HUMAN
678-908
231
4
L:678-678
M:678-678
N:678-678
O:678-678
1
1
1
1
1.12c
ENST00000396009
12c
ENSE00001955202
chr20:
50007988-50003494
4495
NFAC2_HUMAN
908-925
18
0
-
-
[
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1p7hl2 (L:393-575)
1b: SCOP_d1p7hm2 (M:393-575)
1c: SCOP_d1p7hn2 (N:393-575)
1d: SCOP_d1p7ho2 (O:393-575)
2a: SCOP_d1p7hl1 (L:576-678)
2b: SCOP_d1p7hm1 (M:576-678)
2c: SCOP_d1p7hn1 (N:576-678)
2d: SCOP_d1p7ho1 (O:576-678)
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)
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC), DNA-binding domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1p7hl2
L:393-575
1b
d1p7hm2
M:393-575
1c
d1p7hn2
N:393-575
1d
d1p7ho2
O:393-575
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC2)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1p7hl1
L:576-678
2b
d1p7hm1
M:576-678
2c
d1p7hn1
N:576-678
2d
d1p7ho1
O:576-678
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1p7hL01 (L:397-569)
1b: CATH_1p7hM01 (M:397-569)
1c: CATH_1p7hN01 (N:397-569)
1d: CATH_1p7hO01 (O:397-569)
2a: CATH_1p7hL02 (L:570-676)
2b: CATH_1p7hN02 (N:570-676)
2c: CATH_1p7hM02 (M:570-678)
2d: CATH_1p7hO02 (O:570-678)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
1p7hL01
L:397-569
1b
1p7hM01
M:397-569
1c
1p7hN01
N:397-569
1d
1p7hO01
O:397-569
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
1p7hL02
L:570-676
2b
1p7hN02
N:570-676
2c
1p7hM02
M:570-678
2d
1p7hO02
O:570-678
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TIG_1p7hO01 (O:582-675)
1b: PFAM_TIG_1p7hO02 (O:582-675)
1c: PFAM_TIG_1p7hO03 (O:582-675)
1d: PFAM_TIG_1p7hO04 (O:582-675)
2a: PFAM_RHD_1p7hO05 (O:410-570)
2b: PFAM_RHD_1p7hO06 (O:410-570)
2c: PFAM_RHD_1p7hO07 (O:410-570)
2d: PFAM_RHD_1p7hO08 (O:410-570)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Homo sapiens (Human)
(12)
1a
TIG-1p7hO01
O:582-675
1b
TIG-1p7hO02
O:582-675
1c
TIG-1p7hO03
O:582-675
1d
TIG-1p7hO04
O:582-675
Clan
:
P53-like
(54)
Family
:
RHD
(21)
Homo sapiens (Human)
(13)
2a
RHD-1p7hO05
O:410-570
2b
RHD-1p7hO06
O:410-570
2c
RHD-1p7hO07
O:410-570
2d
RHD-1p7hO08
O:410-570
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