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1P72
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (113 KB)
Biol.Unit 2 (225 KB)
Biol.Unit 3 (224 KB)
Biol.Unit 4 (225 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EHV4-TK COMPLEXED WITH THY AND ADP
Authors
:
A. Gardberg, L. Shuvalova, C. Monnerjahn, M. Konrad, A. Lavie
Date
:
30 Apr 03 (Deposition) - 04 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (2x)
Biol. Unit 4: A,B (2x)
Keywords
:
P-Loop, Lid, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gardberg, L. Shuvalova, C. Monnerjahn, M. Konrad, A. Lavie
Structural Basis For The Dual Thymidine And Thymidylate Kinase Activity Of Herpes Thymidine Kinases.
Structure V. 11 1265 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
3a: THYMIDINE (THMa)
3b: THYMIDINE (THMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
SO4
9
Ligand/Ion
SULFATE ION
3
THM
2
Ligand/Ion
THYMIDINE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:69 , GLU A:70 , THR A:71 , ARG A:104 , HOH A:846 , HOH A:881 , SER B:159
BINDING SITE FOR RESIDUE SO4 A 801
02
AC2
SOFTWARE
SER A:159 , HOH A:847 , PHE B:69 , GLU B:70 , THR B:71 , ARG B:104 , HOH B:873 , HOH B:963
BINDING SITE FOR RESIDUE SO4 B 802
03
AC3
SOFTWARE
ARG A:172 , PRO A:174 , GLN A:175
BINDING SITE FOR RESIDUE SO4 A 803
04
AC4
SOFTWARE
GLN A:202 , LEU B:125 , ARG B:127
BINDING SITE FOR RESIDUE SO4 A 804
05
AC5
SOFTWARE
ARG A:313 , GLN A:314
BINDING SITE FOR RESIDUE SO4 A 805
06
AC6
SOFTWARE
ARG A:172 , HOH A:937 , ARG B:172
BINDING SITE FOR RESIDUE SO4 A 806
07
AC7
SOFTWARE
ARG B:172 , PRO B:174 , GLN B:175
BINDING SITE FOR RESIDUE SO4 B 807
08
AC8
SOFTWARE
THR B:311 , HOH B:861
BINDING SITE FOR RESIDUE SO4 B 808
09
AC9
SOFTWARE
THR A:129 , GLN A:130 , ARG B:194
BINDING SITE FOR RESIDUE SO4 B 809
10
BC1
SOFTWARE
VAL A:33 , TYR A:34 , GLY A:35 , ILE A:36 , GLY A:37 , LYS A:38 , SER A:39 , THR A:40 , ARG A:192 , ARG A:196 , GLY A:310 , THR A:311 , PRO A:312 , CYS A:315 , HOH A:809 , HOH A:819 , HOH A:829 , HOH A:852 , HOH A:870 , HOH A:900 , HOH A:906 , HOH A:1030
BINDING SITE FOR RESIDUE ADP A 501
11
BC2
SOFTWARE
TYR A:34 , GLU A:60 , ILE A:74 , TYR A:78 , GLN A:102 , PHE A:105 , ARG A:139 , SER A:144 , PHE A:148 , HOH A:872 , HOH A:957
BINDING SITE FOR RESIDUE THM A 701
12
BC3
SOFTWARE
TYR B:34 , GLY B:35 , ILE B:36 , GLY B:37 , LYS B:38 , SER B:39 , THR B:40 , ARG B:192 , THR B:195 , ARG B:196 , GLY B:310 , THR B:311 , PRO B:312 , CYS B:315 , HOH B:815 , HOH B:823 , HOH B:855 , HOH B:912
BINDING SITE FOR RESIDUE ADP B 502
13
BC4
SOFTWARE
TYR B:34 , GLU B:60 , ILE B:74 , GLN B:102 , PHE B:105 , SER B:144 , PHE B:148 , GLU B:201 , HOH B:827 , HOH B:893 , HOH B:925
BINDING SITE FOR RESIDUE THM B 702
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1p72a_ (A:)
1b: SCOP_d1p72b_ (B:)
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Thymidine kinase
(34)
Equine herpesvirus type 4 [TaxId: 10331]
(4)
1a
d1p72a_
A:
1b
d1p72b_
B:
[
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]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1p72A00 (A:20-352)
1b: CATH_1p72B00 (B:20-352)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Equine herpesvirus 4 (Equid herpesvirus 4)
(4)
1a
1p72A00
A:20-352
1b
1p72B00
B:20-352
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Herpes_TK_1p72B01 (B:32-309)
1b: PFAM_Herpes_TK_1p72B02 (B:32-309)
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)
(
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Clan
:
P-loop_NTPase
(1112)
Family
:
Herpes_TK
(18)
Equine herpesvirus 4 (strain 1942) (EHV-4) (Equine rhinopneumonitis virus)
(4)
1a
Herpes_TK-1p72B01
B:32-309
1b
Herpes_TK-1p72B02
B:32-309
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Show PDB file:
Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (113 KB)
Header - Biol.Unit 1
Biol.Unit 2 (225 KB)
Header - Biol.Unit 2
Biol.Unit 3 (224 KB)
Header - Biol.Unit 3
Biol.Unit 4 (225 KB)
Header - Biol.Unit 4
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