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1P5J
Asym. Unit
Info
Asym.Unit (56 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF HUMAN SERINE DEHYDRATASE
Authors
:
L. Sun, Y. Liu, Z. Rao
Date
:
27 Apr 03 (Deposition) - 01 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Sun, X. Li, Y. Dong, M. Yang, Y. Liu, X. Han, X. Zhang, H. Pang, Z. Rao
Crystallization And Preliminary Crystallographic Analysis O Human Serine Dehydratase.
Acta Crystallogr. , Sect. D V. 59 2297 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:40 , LYS A:41 , ASN A:67 , SER A:166 , VAL A:167 , GLY A:168 , GLY A:169 , GLY A:170 , GLY A:171 , LEU A:172 , ALA A:269 , CYS A:303 , GLY A:304 , GLY A:305 , HOH A:418 , HOH A:420
BINDING SITE FOR RESIDUE PLP A 941
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DEHYDRATASE_SER_THR (A:32-45)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDRATASE_SER_THR
PS00165
Serine/threonine dehydratases pyridoxal-phosphate attachment site.
SDHL_HUMAN
32-45
1
A:32-45
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Exons
(7, 7)
Info
All Exons
Exon 1.2 (A:4-51)
Exon 1.3 (A:52-65)
Exon 1.4 (A:65-111)
Exon 1.5 (A:112-142)
Exon 1.6 (A:142-218)
Exon 1.7 (A:218-260)
Exon 1.8 (A:260-322)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000257549
1
ENSE00001342492
chr12:
113841688-113841573
116
SDHL_HUMAN
-
0
0
-
-
1.2
ENST00000257549
2
ENSE00000998111
chr12:
113837515-113837361
155
SDHL_HUMAN
1-51
51
1
A:4-51
48
1.3
ENST00000257549
3
ENSE00000918014
chr12:
113836956-113836917
40
SDHL_HUMAN
52-65
14
1
A:52-65
14
1.4
ENST00000257549
4
ENSE00000918013
chr12:
113836651-113836512
140
SDHL_HUMAN
65-111
47
1
A:65-111
47
1.5
ENST00000257549
5
ENSE00000918012
chr12:
113836411-113836320
92
SDHL_HUMAN
112-142
31
1
A:112-142
31
1.6
ENST00000257549
6
ENSE00000918011
chr12:
113835197-113834970
228
SDHL_HUMAN
142-218
77
1
A:142-218
77
1.7
ENST00000257549
7
ENSE00000918010
chr12:
113831821-113831697
125
SDHL_HUMAN
218-260
43
1
A:218-260
43
1.8
ENST00000257549
8
ENSE00000918009
chr12:
113830954-113830253
702
SDHL_HUMAN
260-328
69
1
A:260-322
63
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1p5ja_ (A:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
L-serine dehydratase
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1p5ja_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1p5jA01 (A:4-40,A:137-322)
1b: CATH_1p5jA02 (A:41-136)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Human (Homo sapiens)
(4)
1a
1p5jA01
A:4-40,A:137-322
1b
1p5jA02
A:41-136
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PALP_1p5jA01 (A:5-304)
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Clan
:
no clan defined [family: PALP]
(67)
Family
:
PALP
(67)
Homo sapiens (Human)
(6)
1a
PALP-1p5jA01
A:5-304
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Chain A
Asymmetric Unit 1
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