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1P52
Asym. Unit
Info
Asym.Unit (71 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
STRUCTURE OF ARGININE KINASE E314D MUTANT
Authors
:
P. S. Pruett, A. Azzi, S. A. Clark, M. S. Yousef, J. L. Gattis, T. Somasundarum, W. R. Ellington, M. S. Chapman
Date
:
24 Apr 03 (Deposition) - 17 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Arginine Kinase, Phosphagen Kinase, Transition State Analog, Adenosine Tri-Phosphate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Pruett, A. Azzi, S. A. Clark, M. S. Yousef, J. L. Gattis, T. Somasundaram, W. R. Ellington, M. S. Chapman
The Putative Catalytic Bases Have, At Most, An Accessory Role In The Mechanism Of Arginine Kinase.
J. Biol. Chem. V. 278 26952 2003
(for further references see the
PDB file header
)
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: D-ARGININE (DARa)
3a: MAGNESIUM ION (MGa)
4a: NITRATE ION (NO3a)
4b: NITRATE ION (NO3b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
DAR
1
Ligand/Ion
D-ARGININE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NO3
2
Ligand/Ion
NITRATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:112 , LEU A:113 , ASP A:114 , PRO A:115 , GLN A:196 , GLY A:237 , HOH A:546 , HOH A:615
BINDING SITE FOR RESIDUE NO3 A 500
2
AC2
SOFTWARE
ARG A:126 , GLU A:225 , ARG A:229 , ASN A:274 , ARG A:309 , ASP A:314 , ADP A:400 , MG A:402 , DAR A:403 , HOH A:530 , HOH A:892
BINDING SITE FOR RESIDUE NO3 A 401
3
AC3
SOFTWARE
ADP A:400 , NO3 A:401 , HOH A:891 , HOH A:892 , HOH A:893
BINDING SITE FOR RESIDUE MG A 402
4
AC4
SOFTWARE
SER A:122 , ARG A:124 , ARG A:126 , HIS A:185 , TRP A:221 , ARG A:229 , MET A:233 , ARG A:280 , SER A:282 , VAL A:283 , HIS A:284 , ARG A:309 , THR A:311 , ARG A:312 , GLY A:313 , ASP A:314 , ASP A:324 , NO3 A:401 , MG A:402 , HOH A:512 , HOH A:516 , HOH A:517 , HOH A:523 , HOH A:891 , HOH A:892 , HOH A:893 , HOH A:896
BINDING SITE FOR RESIDUE ADP A 400
5
AC5
SOFTWARE
SER A:63 , GLY A:64 , VAL A:65 , GLY A:66 , TYR A:68 , GLU A:225 , CYS A:271 , THR A:273 , ASP A:314 , NO3 A:401 , HOH A:529 , HOH A:534
BINDING SITE FOR RESIDUE DAR A 403
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PHOSPHAGEN_KINASE_N (A:9-91)
2: PHOSPHAGEN_KINASE_C (A:119-356)
3: PHOSPHAGEN_KINASE (A:271-277)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHAGEN_KINASE_N
PS51509
Phosphagen kinase N-terminal domain profile.
KARG_LIMPO
9-91
1
A:9-91
2
PHOSPHAGEN_KINASE_C
PS51510
Phosphagen kinase C-terminal domain profile.
KARG_LIMPO
119-356
1
A:119-356
3
PHOSPHAGEN_KINASE
PS00112
Phosphagen kinase active site signature.
KARG_LIMPO
271-277
1
A:271-277
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1p52a1 (A:2-95)
2a: SCOP_d1p52a2 (A:96-357)
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Classes
(
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(
)
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
Guanido kinase N-terminal domain
(21)
Protein domain
:
Arginine kinase, N-domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
1a
d1p52a1
A:2-95
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Guanido kinase catalytic domain
(29)
Protein domain
:
Arginine kinase, C-terminal domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
2a
d1p52a2
A:96-357
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1p52A02 (A:98-356)
2a: CATH_1p52A01 (A:2-95)
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Atlantic horseshoe crab (Limulus polyphemus)
(7)
1a
1p52A02
A:98-356
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase Creatine Kinase; Chain A, domain 1
(26)
Homologous Superfamily
:
Transferase Creatine Kinase, Chain A, domain 1
(26)
Atlantic horseshoe crab (Limulus polyphemus)
(7)
2a
1p52A01
A:2-95
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_ATP_gua_Ptrans_1p52A01 (A:114-356)
2a: PFAM_ATP_gua_PtransN_1p52A02 (A:18-93)
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Organisms
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)
Clan
:
GCS
(23)
Family
:
ATP-gua_Ptrans
(14)
Limulus polyphemus (Atlantic horseshoe crab)
(6)
1a
ATP-gua_Ptrans-1p52A01
A:114-356
Clan
:
no clan defined [family: ATP-gua_PtransN]
(14)
Family
:
ATP-gua_PtransN
(14)
Limulus polyphemus (Atlantic horseshoe crab)
(6)
2a
ATP-gua_PtransN-1p52A02
A:18-93
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Chain A
Asymmetric Unit 1
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Asym.Unit (71 KB)
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