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1P4C
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURE OF OXIDIZED ACTIVE MUTANT OF (S)-MANDELATE DEHYDROGENASE
Authors
:
N. Sukumar, B. Mitra, F. S. Mathews
Date
:
22 Apr 03 (Deposition) - 28 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Tim Barrel, Hydroxy Acid Oxidizing Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Sukumar, A. R. Dewanti, B. Mitra, F. S. Mathews
High Resolution Structures Of An Oxidized And Reduced Flavoprotein: The Water Switch In A Soluble Form Of (S)-Mandelate Dehydrogenase
J. Biol. Chem. V. 279 3749 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:131 , ARG A:165 , HIS A:255 , ARG A:258 , GLN A:259 , FMN A:490 , HOH A:1011 , HOH A:1043 , HOH A:1070 , HOH A:1276
BINDING SITE FOR RESIDUE SO4 A 901
2
AC2
SOFTWARE
TYR A:26 , PRO A:79 , THR A:80 , GLY A:81 , SER A:108 , GLN A:129 , TYR A:131 , THR A:156 , LYS A:231 , SER A:253 , HIS A:255 , GLY A:256 , ARG A:258 , ASP A:284 , SER A:285 , GLY A:286 , ARG A:288 , GLY A:307 , ARG A:308 , SO4 A:901 , HOH A:903 , HOH A:905 , HOH A:913 , HOH A:943 , HOH A:1097
BINDING SITE FOR RESIDUE FMN A 490
3
AC3
SOFTWARE
TRP A:87 , LYS A:89 , ASP A:240 , ILE A:243 , LYS A:276 , THR A:277 , HOH A:1065 , HOH A:1074 , HOH A:1163
BINDING SITE FOR RESIDUE MES A 890
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FMN_HYDROXY_ACID_DH_1 (A:253-259)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FMN_HYDROXY_ACID_DH_1
PS00557
FMN-dependent alpha-hydroxy acid dehydrogenases active site.
MDLB_PSEPU
272-278
1
A:253-259
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1p4ca_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Membrane-associated (S)-mandelate dehydrogenase
(3)
Pseudomonas putida [TaxId: 303]
(3)
1a
d1p4ca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p4cA00 (A:4-356)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Pseudomonas putida. Organism_taxid: 303.
(7)
1a
1p4cA00
A:4-356
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Pfam Domains
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Asymmetric Unit 1
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