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1P2Z
Asym. Unit
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Asym.Unit (157 KB)
Biol.Unit 1 (444 KB)
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(1)
Title
:
REFINEMENT OF ADENOVIRUS TYPE 2 HEXON WITH CNS
Authors
:
J. J. Rux, P. R. Kuser, R. M. Burnett
Date
:
16 Apr 03 (Deposition) - 11 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Adenovirus, Type 2, Hexon, Virus, Jellyroll, Coat Protein, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Rux, P. R. Kuser, R. M. Burnett
Structural And Phylogenetic Analysis Of Adenovirus Hexons B Use Of High-Resolution X-Ray Crystallographic, Molecular Modeling, And Sequence-Based Methods
J. Virol. V. 77 9553 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
1e: CITRIC ACID (CITe)
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No.
Name
Count
Type
Full Name
1
CIT
5
Ligand/Ion
CITRIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:110 , THR A:111 , PRO A:307 , ASP A:517 , ASN A:520 , LYS A:868
BINDING SITE FOR RESIDUE CIT A 968
2
AC2
SOFTWARE
VAL A:547 , ASN A:548 , LEU A:612 , GLY A:613 , LYS A:699 , GLU A:702 , TYR A:716 , TYR A:728 , HOH A:1176
BINDING SITE FOR RESIDUE CIT A 969
3
AC3
SOFTWARE
ASN A:42 , ALA A:96 , TYR A:381 , LEU A:384 , LEU A:385 , ILE A:388 , LYS A:585 , ASN A:586 , TYR A:797
BINDING SITE FOR RESIDUE CIT A 970
4
AC4
SOFTWARE
PHE A:473
BINDING SITE FOR RESIDUE CIT A 971
5
AC5
SOFTWARE
TYR A:175 , TRP A:221 , ASN A:222 , GLU A:466
BINDING SITE FOR RESIDUE CIT A 972
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1p2za1 (A:5-650)
1b: SCOP_d1p2za2 (A:651-962)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group II dsDNA viruses VP
(10)
Family
:
Adenovirus hexon
(4)
Protein domain
:
Adenovirus hexon
(4)
Human adenovirus type 2 [TaxId: 10515]
(1)
1a
d1p2za1
A:5-650
1b
d1p2za2
A:651-962
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1p2zA02 (A:411-419,A:478-554,A:814-879)
2a: CATH_1p2zA03 (A:59-116,A:333-410,A:555-662,A:937-957)
3a: CATH_1p2zA01 (A:117-332)
4a: CATH_1p2zA04 (A:663-813,A:880-936)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hexon Major Viral Coat Protein; domain 2
(2)
Homologous Superfamily
:
Hexon Major Viral Coat Protein, domain 2
(2)
Human adenovirus 2. Organism_taxid: 10515
(1)
1a
1p2zA02
A:411-419,A:478-554,A:814-879
Topology
:
Hexon Major Viral Coat Protein; domain 3
(2)
Homologous Superfamily
:
Hexon Major Viral Coat Protein, domain 3
(2)
Human adenovirus 2. Organism_taxid: 10515
(1)
2a
1p2zA03
A:59-116,A:333-410,A:555-662,A:937-957
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Adenovirus Type 2 Hexon; domain 1
(2)
Homologous Superfamily
:
Adenovirus Type 2 Hexon, domain 1
(2)
Human adenovirus 2. Organism_taxid: 10515
(1)
3a
1p2zA01
A:117-332
Architecture
:
Distorted Sandwich
(506)
Topology
:
Adenovirus Type 2 Hexon; domain 4
(7)
Homologous Superfamily
:
Adenovirus Type 2 Hexon, domain 4
(4)
Human adenovirus 2. Organism_taxid: 10515
(1)
4a
1p2zA04
A:663-813,A:880-936
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (157 KB)
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