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1P1J
Biol. Unit 1
Info
Asym.Unit (194 KB)
Biol.Unit 1 (374 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 1L-MYO-INOSITOL 1-PHOSPHATE SYNTHASE COMPLEXED WITH NADH
Authors
:
X. Jin, J. H. Geiger
Date
:
12 Apr 03 (Deposition) - 08 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
1L-Myo-Inositol 1-Phosphate, Nadh, Isomerase, Rossmann Fold
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
X. Jin, J. H. Geiger
Structures Of Nad(+)- And Nadh-Bound 1-L-Myo-Inositol 1-Phosphate Synthase.
Acta Crystallogr. , Sect. D V. 59 1154 2003
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:323 , GLY A:324 , GLN A:325 , THR A:326 , LYS A:373 , LYS A:412 , LYS A:489 , HOH A:2207
BINDING SITE FOR RESIDUE PO4 A 1700
2
AC2
SOFTWARE
SER B:323 , GLY B:324 , GLN B:325 , THR B:326 , LYS B:373 , LYS B:412 , LYS B:489 , GOL B:1311 , HOH B:1704
BINDING SITE FOR RESIDUE PO4 B 1701
3
AC3
SOFTWARE
ILE A:71 , GLY A:72 , GLY A:74 , GLY A:75 , ASN A:76 , ASN A:77 , ASP A:148 , ILE A:149 , SER A:184 , ILE A:185 , ARG A:198 , THR A:244 , ALA A:245 , ASN A:246 , THR A:247 , GLY A:295 , SER A:296 , ASP A:320 , LEU A:321 , SER A:323 , ASN A:355 , ASP A:356 , LYS A:369 , ASP A:438 , ALA A:442 , LYS A:489 , GOL A:1310 , HOH A:1726 , HOH A:1735 , HOH A:1762 , HOH A:1824 , HOH A:1864 , HOH A:2000 , HOH A:2238
BINDING SITE FOR RESIDUE NAI A 650
4
AC4
SOFTWARE
ILE B:71 , GLY B:72 , GLY B:74 , GLY B:75 , ASN B:76 , ASN B:77 , ASP B:148 , ILE B:149 , SER B:184 , ILE B:185 , ARG B:198 , THR B:244 , ALA B:245 , ASN B:246 , THR B:247 , GLY B:295 , SER B:296 , ASP B:320 , LEU B:321 , SER B:323 , ASN B:355 , ASP B:356 , LYS B:369 , ASP B:438 , ALA B:442 , LYS B:489 , GOL B:1311 , HOH B:1713 , HOH B:1745 , HOH B:1750 , HOH B:1902 , HOH B:1905 , HOH B:1908 , HOH B:2231
BINDING SITE FOR RESIDUE NAI B 660
5
AC5
SOFTWARE
ASN A:350 , ASP A:356 , LEU A:360 , LYS A:369 , LYS A:373 , ILE A:402 , LYS A:412 , ASP A:438 , NAI A:650
BINDING SITE FOR RESIDUE GOL A 1310
6
AC6
SOFTWARE
ASN B:350 , ASP B:356 , LYS B:369 , LYS B:373 , ILE B:402 , LYS B:412 , ASP B:438 , NAI B:660 , PO4 B:1701
BINDING SITE FOR RESIDUE GOL B 1311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1p1ja2 (A:323-437)
1b: SCOP_d1p1jb2 (B:323-437)
2a: SCOP_d1p1ja1 (A:9-322,A:438-533)
2b: SCOP_d1p1jb1 (B:10-322,B:438-533)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Dihydrodipicolinate reductase-like
(45)
Protein domain
:
Myo-inositol 1-phosphate synthase
(14)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(9)
1a
d1p1ja2
A:323-437
1b
d1p1jb2
B:323-437
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Myo-inositol 1-phosphate synthase
(14)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(9)
2a
d1p1ja1
A:9-322,A:438-533
2b
d1p1jb1
B:10-322,B:438-533
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p1jB02 (B:323-437)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Baker's yeast (Saccharomyces cerevisiae)
(12)
1a
1p1jB02
B:323-437
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_NAD_binding_5_1p1jB01 (B:66-515)
1b: PFAM_NAD_binding_5_1p1jB02 (B:66-515)
2a: PFAM_Inos_1_P_synth_1p1jB03 (B:324-439)
2b: PFAM_Inos_1_P_synth_1p1jB04 (B:324-439)
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Clan
:
NADP_Rossmann
(1239)
Family
:
NAD_binding_5
(10)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
1a
NAD_binding_5-1p1jB01
B:66-515
1b
NAD_binding_5-1p1jB02
B:66-515
Clan
:
no clan defined [family: Inos-1-P_synth]
(10)
Family
:
Inos-1-P_synth
(10)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
2a
Inos-1-P_synth-1p1jB03
B:324-439
2b
Inos-1-P_synth-1p1jB04
B:324-439
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Asym.Unit (194 KB)
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