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1P16
Biol. Unit 1
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Asym.Unit (151 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
STRUCTURE OF AN MRNA CAPPING ENZYME BOUND TO THE PHOSPHORYLATED CARBOXYL-TERMINAL DOMAIN OF RNA POLYMERASE II
Authors
:
C. Fabrega, V. Shen, S. Shuman, C. D. Lima
Date
:
11 Apr 03 (Deposition) - 15 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Guanylyltransferase, Candida Albicans, Rna Polymerase Ii, Transcription, Capping, Ctd, Mrna
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Fabrega, V. Shen, S. Shuman, C. D. Lima
Structure Of An Mrna Capping Enzyme Bound To The Phosphorylated Carboxy-Terminal Domain Of Rna Polymerase Ii.
Mol. Cell V. 11 1549 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1a: GUANOSINE-5'-MONOPHOSPHATE (Ga)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
5a: PHOSPHOSERINE (SEPa)
5b: PHOSPHOSERINE (SEPb)
5c: PHOSPHOSERINE (SEPc)
5d: PHOSPHOSERINE (SEPd)
5e: PHOSPHOSERINE (SEPe)
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Label:
No.
Name
Count
Type
Full Name
1
G
-1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
GTP
-1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
3
Ligand/Ion
PHOSPHATE ION
5
SEP
2
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:44 , ARG A:92 , LYS A:241 , G A:1167 , HOH A:7097
BINDING SITE FOR RESIDUE PO4 A 7001
2
AC2
SOFTWARE
LYS A:23
BINDING SITE FOR RESIDUE PO4 A 7002
3
AC3
SOFTWARE
ARG A:26
BINDING SITE FOR RESIDUE PO4 A 7005
4
AC4
SOFTWARE
GLN A:44 , PRO A:45 , CYS A:65 , LYS A:67 , THR A:68 , GLU A:126 , PHE A:144 , LYS A:197 , ILE A:223 , LEU A:239 , PO4 A:7001 , HOH A:7092 , HOH A:7135
BINDING SITE FOR RESIDUE G A 1167
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1p16a1 (A:246-390)
1b: SCOP_d1p16b1 (B:246-389)
2a: SCOP_d1p16a2 (A:1-245)
2b: SCOP_d1p16b2 (B:1-245)
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
DNA ligase/mRNA capping enzyme postcatalytic domain
(12)
Protein domain
:
mRNA capping enzyme alpha subunit
(1)
Yeast (Candida albicans) [TaxId: 5476]
(1)
1a
d1p16a1
A:246-390
1b
d1p16b1
B:246-389
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
DNA ligase/mRNA capping enzyme, catalytic domain
(33)
Family
:
mRNA capping enzyme
(4)
Protein domain
:
mRNA capping enzyme alpha subunit
(1)
Yeast (Candida albicans) [TaxId: 5476]
(1)
2a
d1p16a2
A:1-245
2b
d1p16b2
B:1-245
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1p16B02 (B:245-389)
1b: CATH_1p16A01 (A:2-6,A:245-390)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Candida albicans. Organism_taxid: 5476.
(1)
1a
1p16B02
B:245-389
1b
1p16A01
A:2-6,A:245-390
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
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