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Getting 'Exon' information from database.
1P0M
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BUTYRYL CHOLINESTERASE IN COMPLEX WITH A CHOLINE MOLECULE
Authors
:
Y. Nicolet, O. Lockridge, P. Masson, J. C. Fontecilla-Camps, F. Nachon
Date
:
10 Apr 03 (Deposition) - 05 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Serine Hydrolase, Choline, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nicolet, O. Lockridge, P. Masson, J. C. Fontecilla-Camps, F. Nacho
Crystal Structure Of Human Butyrylcholinesterase And Of Its Complexes With Substrate And Products.
J. Biol. Chem. V. 278 41141 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(7, 16)
Info
All Hetero Components
1a: CHOLINE ION (CHTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CHT
1
Ligand/Ion
CHOLINE ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
4
GOL
2
Ligand/Ion
GLYCEROL
5
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:241 , ASN A:245 , NAG A:531 , FUC A:532
BINDING SITE FOR RESIDUE NAG A 530
02
AC2
SOFTWARE
NAG A:530
BINDING SITE FOR RESIDUE NAG A 531
03
AC3
SOFTWARE
ASN A:245 , LEU A:249 , PHE A:278 , NAG A:530
BINDING SITE FOR RESIDUE FUC A 532
04
AC4
SOFTWARE
SER A:338 , ASN A:341 , ASN A:342 , NAG A:534 , FUC A:535
BINDING SITE FOR RESIDUE NAG A 533
05
AC5
SOFTWARE
NAG A:533
BINDING SITE FOR RESIDUE NAG A 534
06
AC6
SOFTWARE
NAG A:533
BINDING SITE FOR RESIDUE FUC A 535
07
AC7
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190 , HOH A:765 , HOH A:766 , HOH A:922 , HOH A:923
BINDING SITE FOR RESIDUE NAG A 536
08
AC8
SOFTWARE
ARG A:14 , ASN A:57 , HOH A:852 , HOH A:853 , HOH A:887
BINDING SITE FOR RESIDUE NAG A 537
09
AC9
SOFTWARE
ARG A:465 , LYS A:469 , ASN A:485 , HOH A:958
BINDING SITE FOR RESIDUE NAG A 538
10
BC1
SOFTWARE
GLN A:316 , GLY A:413 , ASN A:414 , ASN A:415 , HOH A:951
BINDING SITE FOR RESIDUE SO4 A 601
11
BC2
SOFTWARE
THR A:488 , THR A:508
BINDING SITE FOR RESIDUE CL A 702
12
BC3
SOFTWARE
LYS A:323 , TYR A:420 , ARG A:515 , GLN A:518
BINDING SITE FOR RESIDUE MES A 606
13
BC4
SOFTWARE
TRP A:82 , GLU A:197 , HIS A:438 , HOH A:811
BINDING SITE FOR RESIDUE CHT A 607
14
BC5
SOFTWARE
LEU A:18 , TYR A:61 , TRP A:98 , ASP A:129 , LYS A:131
BINDING SITE FOR RESIDUE GOL A 602
15
BC6
SOFTWARE
TRP A:231 , THR A:234 , GLU A:238 , ARG A:242 , VAL A:288
BINDING SITE FOR RESIDUE GOL A 603
[
close Site info
]
SAPs(SNPs)/Variants
(42, 42)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_072094 (K12R, chain A, )
02: VAR_040012 (T24M, chain A, )
03: VAR_040013 (F28I, chain A, )
04: VAR_040014 (Y33C, chain A, )
05: VAR_072730 (A34V, chain A, )
06: VAR_040015 (P37S, chain A, )
07: VAR_002360 (D70G, chain A, )
08: VAR_040016 (D70H, chain A, )
09: VAR_072095 (G75R, chain A, )
10: VAR_072096 (E90D, chain A, )
11: VAR_040017 (N96Y, chain A, )
12: VAR_072097 (I99M, chain A, )
13: VAR_040018 (P100S, chain A, )
14: VAR_040019 (G115D, chain A, )
15: VAR_040020 (L125F, chain A, )
16: VAR_040021 (Y128C, chain A, )
17: VAR_040022 (V142M, chain A, )
18: VAR_040023 (D170E, chain A, )
19: VAR_040024 (S198G, chain A, )
20: VAR_040025 (A199V, chain A, )
21: VAR_040026 (A201T, chain A, )
22: VAR_072098 (V204D, chain A, )
23: VAR_040027 (T243M, chain A, )
24: VAR_040028 (T250P, chain A, )
25: VAR_040029 (E255D, chain A, )
26: VAR_040030 (K267R, chain A, )
27: VAR_072099 (V294M, chain A, )
28: VAR_040031 (L307P, chain A, )
29: VAR_040032 (A328D, chain A, )
30: VAR_002362 (L330I, chain A, )
31: VAR_072100 (G333C, chain A, )
32: VAR_040033 (G365R, chain A, )
33: VAR_040034 (R386C, chain A, )
34: VAR_040035 (G390V, chain A, )
35: VAR_040036 (F418S, chain A, )
36: VAR_040037 (E460K, chain A, )
37: VAR_072101 (R470W, chain A, )
38: VAR_040038 (W471R, chain A, )
39: VAR_040039 (F474L, chain A, )
40: VAR_040040 (E497V, chain A, )
41: VAR_040041 (R515C, chain A, )
42: VAR_040042 (Q518L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072094
K
40
R
CHLE_HUMAN
Polymorphism
116047990
A
K
12
R
02
UniProt
VAR_040012
T
52
M
CHLE_HUMAN
Disease (BChE deficiency)
56309853
A
T
24
M
03
UniProt
VAR_040013
F
56
I
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
28
I
04
UniProt
VAR_040014
Y
61
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
33
C
05
UniProt
VAR_072730
A
62
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
34
V
06
UniProt
VAR_040015
P
65
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
P
37
S
07
UniProt
VAR_002360
D
98
G
CHLE_HUMAN
Disease (BChE deficiency)
1799807
A
D
70
G
08
UniProt
VAR_040016
D
98
H
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
70
H
09
UniProt
VAR_072095
G
103
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
75
R
10
UniProt
VAR_072096
E
118
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
90
D
11
UniProt
VAR_040017
N
124
Y
CHLE_HUMAN
Disease (BChE deficiency)
---
A
N
96
Y
12
UniProt
VAR_072097
I
127
M
CHLE_HUMAN
Polymorphism
---
A
I
99
M
13
UniProt
VAR_040018
P
128
S
CHLE_HUMAN
Disease (BChE deficiency)
3732880
A
P
100
S
14
UniProt
VAR_040019
G
143
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
115
D
15
UniProt
VAR_040020
L
153
F
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
125
F
16
UniProt
VAR_040021
Y
156
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
128
C
17
UniProt
VAR_040022
V
170
M
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
142
M
18
UniProt
VAR_040023
D
198
E
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
170
E
19
UniProt
VAR_040024
S
226
G
CHLE_HUMAN
Disease (BChE deficiency)
---
A
S
198
G
20
UniProt
VAR_040025
A
227
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
199
V
21
UniProt
VAR_040026
A
229
T
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
201
T
22
UniProt
VAR_072098
V
232
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
204
D
23
UniProt
VAR_040027
T
271
M
CHLE_HUMAN
Disease (BChE deficiency)
28933389
A
T
243
M
24
UniProt
VAR_040028
T
278
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
T
250
P
25
UniProt
VAR_040029
E
283
D
CHLE_HUMAN
Polymorphism
16849700
A
E
255
D
26
UniProt
VAR_040030
K
295
R
CHLE_HUMAN
Disease (BChE deficiency)
115624085
A
K
267
R
27
UniProt
VAR_072099
V
322
M
CHLE_HUMAN
Polymorphism
---
A
V
294
M
28
UniProt
VAR_040031
L
335
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
307
P
29
UniProt
VAR_040032
A
356
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
328
D
30
UniProt
VAR_002362
L
358
I
CHLE_HUMAN
Disease (BChE deficiency)
121918557
A
L
330
I
31
UniProt
VAR_072100
G
361
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
333
C
32
UniProt
VAR_040033
G
393
R
CHLE_HUMAN
Disease (BChE deficiency)
115129687
A
G
365
R
33
UniProt
VAR_040034
R
414
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
386
C
34
UniProt
VAR_040035
G
418
V
CHLE_HUMAN
Disease (BChE deficiency)
28933390
A
G
390
V
35
UniProt
VAR_040036
F
446
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
418
S
36
UniProt
VAR_040037
E
488
K
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
460
K
37
UniProt
VAR_072101
R
498
W
CHLE_HUMAN
Polymorphism
115017300
A
R
470
W
38
UniProt
VAR_040038
W
499
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
W
471
R
39
UniProt
VAR_040039
F
502
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
474
L
40
UniProt
VAR_040040
E
525
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
497
V
41
UniProt
VAR_040041
R
543
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
515
C
42
UniProt
VAR_040042
Q
546
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Q
518
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:90-100)
2: CARBOXYLESTERASE_B_1 (A:185-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
CHLE_HUMAN
118-128
1
A:90-100
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
CHLE_HUMAN
213-228
1
A:185-200
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.2 (A:4-478 (gaps))
Exon 1.4 (A:478-529)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.4
3: Boundary 1.4/1.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264381
1a
ENSE00001954521
chr3:
165555260-165555102
159
CHLE_HUMAN
-
0
0
-
-
1.2
ENST00000264381
2
ENSE00000826111
chr3:
165548829-165547305
1525
CHLE_HUMAN
1-506
506
1
A:4-478 (gaps)
475
1.4
ENST00000264381
4
ENSE00000780132
chr3:
165504099-165503933
167
CHLE_HUMAN
506-562
57
1
A:478-529
52
1.7c
ENST00000264381
7c
ENSE00001810445
chr3:
165491294-165490692
603
CHLE_HUMAN
562-602
41
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1p0ma_ (A:)
View:
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Butyryl cholinesterase
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1p0ma_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1p0mA00 (A:4-529)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1p0mA00
A:4-529
[
close CATH info
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_COesterase_1p0mA01 (A:4-522)
View:
Select:
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Clans
(
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(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
COesterase
(79)
Homo sapiens (Human)
(38)
1a
COesterase-1p0mA01
A:4-522
[
close Pfam info
]
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