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1OZ3
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (492 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3-MBT REPEATS OF LETHAL (3) MALIGNANT BRAIN TUMOR (NATIVE-I) AT 1.85 ANGSTROM
Authors
:
W. K. Wang, V. Tereshko, P. Boccuni, D. Macgrogan, S. D. Nimer, D. J. Pate
Date
:
07 Apr 03 (Deposition) - 19 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (3x)
Keywords
:
Propeller, Three Malignant Brain Tumor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. K. Wang, V. Tereshko, P. Boccuni, D. Macgrogan, S. D. Nimer, D. J. Patel
Malignant Brain Tumor Repeats: A Three-Leaved Propeller Architecture With Ligand/Peptide Binding Pockets.
Structure V. 11 775 2003
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Hetero Components
(3, 31)
Info
All Hetero Components
1a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
1b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
1c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
1d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
1e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
1f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MES
6
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
10
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR B:275 , SER B:276 , HIS B:279 , LYS B:307
BINDING SITE FOR RESIDUE SO4 B 1001
02
AC2
SOFTWARE
TYR A:275 , SER A:276 , HIS A:279 , LYS A:307 , PRO C:446
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
HIS B:482 , ASP B:484 , GLY B:485
BINDING SITE FOR RESIDUE SO4 B 1003
04
AC4
SOFTWARE
HIS C:482 , GLY C:485
BINDING SITE FOR RESIDUE SO4 C 1004
05
AC5
SOFTWARE
LYS A:235 , SER A:315 , TRP A:316 , SER A:317
BINDING SITE FOR RESIDUE SO4 A 1005
06
AC6
SOFTWARE
LYS C:235 , GLU C:297 , SER C:315 , TRP C:316 , SER C:317
BINDING SITE FOR RESIDUE SO4 C 1006
07
AC7
SOFTWARE
SER B:487 , HIS B:488 , LYS C:442
BINDING SITE FOR RESIDUE SO4 B 1007
08
AC8
SOFTWARE
PRO C:329 , LYS C:330 , HIS C:331
BINDING SITE FOR RESIDUE SO4 C 1008
09
AC9
SOFTWARE
PRO B:221 , VAL B:222 , HOH B:1112 , SER C:487 , TYR C:490
BINDING SITE FOR RESIDUE SO4 B 1009
10
BC1
SOFTWARE
LYS B:480 , TRP B:493 , HOH B:1175
BINDING SITE FOR RESIDUE SO4 B 1010
11
BC2
SOFTWARE
PHE C:256 , PHE C:272 , TYR C:275 , SER C:276 , HIS C:279 , LYS C:307
BINDING SITE FOR RESIDUE MES C 1011
12
BC3
SOFTWARE
ASP C:355 , ASN C:358 , PHE C:379 , TRP C:382 , TYR C:386
BINDING SITE FOR RESIDUE MES C 1012
13
BC4
SOFTWARE
ASP B:248 , PHE B:256 , PHE B:272 , HIS B:279
BINDING SITE FOR RESIDUE MES B 1021
14
BC5
SOFTWARE
ASP B:355 , ASN B:358 , CYS B:363 , PHE B:379 , TRP B:382 , TYR B:386
BINDING SITE FOR RESIDUE MES B 1022
15
BC6
SOFTWARE
PHE A:256 , PHE A:272 , TYR A:275 , HIS A:279
BINDING SITE FOR RESIDUE MES A 1031
16
BC7
SOFTWARE
ASP A:355 , ASN A:358 , CYS A:363 , PHE A:379 , TRP A:382 , TYR A:386
BINDING SITE FOR RESIDUE MES A 1032
[
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SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051098 (I479M, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051098
I
479
M
LMBL1_HUMAN
Polymorphism
6017104
A/B/C
I
479
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 9)
Info
All PROSITE Patterns/Profiles
1: MBT (A:206-306,B:206-306,C:206-306|A:31...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
LMBL1_HUMAN
206-306
314-413
422-517
9
A:206-306
B:206-306
C:206-306
A:314-413
B:314-413
C:314-413
A:422-517
B:422-517
C:422-517
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d1oz3a1 (A:206-313)
1b: SCOP_d1oz3c2 (C:314-421)
1c: SCOP_d1oz3c3 (C:422-518)
1d: SCOP_d1oz3a2 (A:314-421)
1e: SCOP_d1oz3a3 (A:422-518)
1f: SCOP_d1oz3b1 (B:206-313)
1g: SCOP_d1oz3b2 (B:314-421)
1h: SCOP_d1oz3b3 (B:422-518)
1i: SCOP_d1oz3c1 (C:206-313)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
MBT repeat
(8)
Protein domain
:
Lethal(3)malignant brain tumor-like protein
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1oz3a1
A:206-313
1b
d1oz3c2
C:314-421
1c
d1oz3c3
C:422-518
1d
d1oz3a2
A:314-421
1e
d1oz3a3
A:422-518
1f
d1oz3b1
B:206-313
1g
d1oz3b2
B:314-421
1h
d1oz3b3
B:422-518
1i
d1oz3c1
C:206-313
[
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CATH Domains
(1, 9)
Info
all CATH domains
1a: CATH_1oz3A02 (A:235-338)
1b: CATH_1oz3A03 (A:339-446)
1c: CATH_1oz3B03 (B:339-446)
1d: CATH_1oz3C03 (C:339-446)
1e: CATH_1oz3A01 (A:206-234,A:447-518)
1f: CATH_1oz3B01 (B:206-234,B:447-518)
1g: CATH_1oz3C01 (C:206-234,C:447-518)
1h: CATH_1oz3B02 (B:235-338)
1i: CATH_1oz3C02 (C:235-338)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
1oz3A02
A:235-338
1b
1oz3A03
A:339-446
1c
1oz3B03
B:339-446
1d
1oz3C03
C:339-446
1e
1oz3A01
A:206-234,A:447-518
1f
1oz3B01
B:206-234,B:447-518
1g
1oz3C01
C:206-234,C:447-518
1h
1oz3B02
B:235-338
1i
1oz3C02
C:235-338
[
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Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_MBT_1oz3C01 (C:453-518)
1b: PFAM_MBT_1oz3C02 (C:453-518)
1c: PFAM_MBT_1oz3C03 (C:453-518)
1d: PFAM_MBT_1oz3C04 (C:453-518)
1e: PFAM_MBT_1oz3C05 (C:453-518)
1f: PFAM_MBT_1oz3C06 (C:453-518)
1g: PFAM_MBT_1oz3C07 (C:453-518)
1h: PFAM_MBT_1oz3C08 (C:453-518)
1i: PFAM_MBT_1oz3C09 (C:453-518)
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Clans
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Organisms
(
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(
)
Clan
:
Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-1oz3C01
C:453-518
1b
MBT-1oz3C02
C:453-518
1c
MBT-1oz3C03
C:453-518
1d
MBT-1oz3C04
C:453-518
1e
MBT-1oz3C05
C:453-518
1f
MBT-1oz3C06
C:453-518
1g
MBT-1oz3C07
C:453-518
1h
MBT-1oz3C08
C:453-518
1i
MBT-1oz3C09
C:453-518
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