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Asym. Unit
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Asym.Unit (199 KB)
Biol.Unit 1 (193 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HOMODIMERIC BIFUNCTIONAL TRANSFORMYLASE AND CYCLOHYDROLASE ENZYME AVIAN ATIC IN COMPLEX WITH A MULTISUBSTRATE ADDUCT INHIBITOR BETA-DADF.
Authors
:
D. W. Wolan, S. E. Greasley, M. J. Wall, S. J. Benkovic, I. A. Wilson
Date
:
07 Apr 03 (Deposition) - 30 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Homodimer, 2 Functional Domains, Impch Domain = Alpha/Beta/Alpha, Aicar Tfase = 2 Alpha/Beta/Alpha Domains, 1 Alpha + Beta Domain, Transferase, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. W. Wolan, S. E. Greasley, M. J. Wall, S. J. Benkovic, I. A. Wilson
Structure Of Avian Aicar Transformylase With A Multisubstrate Adduct Inhibitor Beta-Dadf Identifies The Folate Binding Site.
Biochemistry V. 42 10904 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: 2-[4-((2-AMINO-4-OXO-3,4-DIHYDRO-P... (MS1a)
2b: 2-[4-((2-AMINO-4-OXO-3,4-DIHYDRO-P... (MS1b)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
2
MS1
2
Ligand/Ion
2-[4-((2-AMINO-4-OXO-3,4-DIHYDRO-PYRIDO[3,2-D]PYRIMIDIN-6-YLMETHYL)-{3-[5-CARBAMOYL-3-(3,4-DIHYDROXY-5-PHOSPHONOOXYMETHYL-TETRAHYDRO-FURAN-2-YL)-3H-IMIDAZOL-4-YL]-ACRYLOYL}-AMINO)-BENZOYLAMINO]-PENTANEDIOIC ACID
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL B:426 , THR B:429 , SER B:431 , SER B:433 , ASP B:540 , LEU B:590 , HIS B:592
BINDING SITE FOR RESIDUE K B 1003
2
AC2
SOFTWARE
VAL A:426 , THR A:429 , SER A:431 , SER A:433 , ASP A:540 , LEU A:590 , HIS A:592
BINDING SITE FOR RESIDUE K A 1004
3
AC3
SOFTWARE
SER A:11 , SER A:35 , GLY A:36 , GLY A:37 , THR A:38
BINDING SITE FOR RESIDUE PO4 A 1005
4
AC4
SOFTWARE
SER B:11 , LYS B:15 , SER B:35 , GLY B:36 , GLY B:37 , THR B:38 , LYS B:67
BINDING SITE FOR RESIDUE PO4 B 1006
5
AC5
SOFTWARE
ARG A:208 , TYR A:209 , ILE A:239 , ASN A:240 , LYS A:267 , MET A:313 , PHE A:316 , GLY A:317 , ASP A:340 , HOH A:1034 , HOH A:1063 , GLN B:450 , SER B:451 , ARG B:452 , ILE B:453 , ALA B:541 , PHE B:542 , PRO B:544 , PHE B:545 , ASP B:547 , SER B:566 , ALA B:567 , ARG B:589 , PHE B:591 , HOH B:1007 , HOH B:1008 , HOH B:1028 , HOH B:1037 , HOH B:1047 , HOH B:1092 , HOH B:1117 , HOH B:1127 , HOH B:1160 , HOH B:1180
BINDING SITE FOR RESIDUE MS1 B 1001
6
AC6
SOFTWARE
GLN A:450 , ARG A:452 , ILE A:453 , ALA A:541 , PHE A:542 , PHE A:545 , ASP A:547 , SER A:566 , ALA A:567 , ARG A:589 , PHE A:591 , HOH A:1021 , HOH A:1034 , HOH A:1042 , HOH A:1065 , HOH A:1130 , HOH A:1144 , HOH A:1145 , HOH A:1168 , HOH A:1203 , ARG B:208 , TYR B:209 , ILE B:239 , LYS B:267 , MET B:313 , PHE B:316 , GLY B:317 , ASP B:340
BINDING SITE FOR RESIDUE MS1 A 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1oz0a2 (A:201-593)
1b: SCOP_d1oz0b2 (B:201-593)
2a: SCOP_d1oz0a1 (A:4-200)
2b: SCOP_d1oz0b1 (B:4-200)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Protein domain
:
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
1a
d1oz0a2
A:201-593
1b
d1oz0b2
B:201-593
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Inosicase
(12)
Protein domain
:
IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
2a
d1oz0a1
A:4-200
2b
d1oz0b1
B:4-200
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1oz0A02 (A:375-476,A:520-585)
1b: CATH_1oz0A03 (A:228-374)
1c: CATH_1oz0B03 (B:228-374)
1d: CATH_1oz0B02 (B:375-476,B:520-585)
2a: CATH_1oz0A04 (A:4-198)
2b: CATH_1oz0B04 (B:4-198)
3a: CATH_1oz0A01 (A:477-519)
3b: CATH_1oz0B01 (B:477-519)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Cytidine Deaminase; domain 2
(44)
Homologous Superfamily
:
[code=3.40.140.20, no name defined]
(11)
Chicken (Gallus gallus)
(8)
1a
1oz0A02
A:375-476,A:520-585
1b
1oz0A03
A:228-374
1c
1oz0B03
B:228-374
1d
1oz0B02
B:375-476,B:520-585
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Chicken (Gallus gallus)
(8)
2a
1oz0A04
A:4-198
2b
1oz0B04
B:4-198
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.440, no name defined]
(11)
Chicken (Gallus gallus)
(8)
3a
1oz0A01
A:477-519
3b
1oz0B01
B:477-519
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_AICARFT_IMPCHas_1oz0B01 (B:136-463)
1b: PFAM_AICARFT_IMPCHas_1oz0B02 (B:136-463)
2a: PFAM_MGS_1oz0B03 (B:17-131)
2b: PFAM_MGS_1oz0B04 (B:17-131)
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)
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)
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)
Organisms
(
)
(
)
Clan
:
CDA
(39)
Family
:
AICARFT_IMPCHas
(5)
Gallus gallus (Chicken)
(3)
1a
AICARFT_IMPCHas-1oz0B01
B:136-463
1b
AICARFT_IMPCHas-1oz0B02
B:136-463
Clan
:
no clan defined [family: MGS]
(13)
Family
:
MGS
(13)
Gallus gallus (Chicken)
(3)
2a
MGS-1oz0B03
B:17-131
2b
MGS-1oz0B04
B:17-131
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Asym.Unit (199 KB)
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