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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1OYH
Biol. Unit 1
Info
Asym.Unit (143 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF P13 ALANINE VARIANT OF ANTITHROMBIN
Authors
:
D. J. D. Johnson, J. A. Huntington
Date
:
04 Apr 03 (Deposition) - 13 Apr 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : I,L
Biol. Unit 1: I (1x)
Biol. Unit 2: L (1x)
Keywords
:
Thrombin; Inhibition; Heparin Analogue; Serine Protease Inhibitor, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. D. Johnson, J. A. Huntington
The Influence Of Hinge Region Residue Glu-381 On Antithrombin Allostery And Metastability
J. Biol. Chem. V. 279 4913 2004
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN I:96 , LYS I:350
BINDING SITE FOR RESIDUE NAG I 801
2
AC2
SOFTWARE
ASN I:155 , GLU I:156 , NAG I:842
BINDING SITE FOR RESIDUE NAG I 841
3
AC3
SOFTWARE
NAG I:841
BINDING SITE FOR RESIDUE NAG I 842
4
AC4
SOFTWARE
ASN I:192
BINDING SITE FOR RESIDUE NAG I 861
5
BC2
SOFTWARE
GLU I:347 , LYS I:348 , BMA L:863
BINDING SITE FOR RESIDUE MAN L 868
[
close Site info
]
SAPs(SNPs)/Variants
(86, 86)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_007033 (I7N, chain I, )
02: VAR_007034 (M20T, chain I, )
03: VAR_071199 (C21F, chain I, )
04: VAR_007035 (R24C, chain I, )
05: VAR_007036 (P41L, chain I, )
06: VAR_007037 (R47C, chain I, )
07: VAR_007038 (R47H, chain I, )
08: VAR_007039 (R47S, chain I, )
09: VAR_007041 (R57C, chain I, )
10: VAR_007042 (F58L, chain I, )
11: VAR_027452 (Y63C, chain I, )
12: VAR_012316 (Y63S, chain I, )
13: VAR_027453 (L66P, chain I, )
14: VAR_007044 (P80T, chain I, )
15: VAR_027454 (M89K, chain I, )
16: VAR_071200 (G93D, chain I, )
17: VAR_027455 (C95R, chain I, )
18: VAR_007045 (L99F, chain I, )
19: VAR_007046 (L99V, chain I, )
20: VAR_007047 (Q101K, chain I, )
21: VAR_027456 (K114E, chain I, )
22: VAR_013085 (T115A, chain I, )
23: VAR_007049 (S116P, chain I, )
24: VAR_007050 (Q118P, chain I, )
25: VAR_007051 (H120Y, chain I, )
26: VAR_007053 (L126P, chain I, )
27: VAR_027457 (C128Y, chain I, )
28: VAR_007054 (R129Q, chain I, )
29: VAR_012750 (N135T, chain I, )
30: VAR_071201 (S138P, chain I, )
31: VAR_027458 (L146H, chain I, )
32: VAR_027459 (F147L, chain I, )
33: VAR_007055 (Y158C, chain I, )
34: VAR_007056 (Y166C, chain I, )
35: VAR_027460 (Y166H, chain I, )
36: VAR_027461 (S182F, chain I, )
37: VAR_007057 (S182Y, chain I, )
38: VAR_071202 (I186N, chain I, )
39: VAR_007059 (N187D, chain I, )
40: VAR_007058 (N187K, chain I, )
41: VAR_027463 (S191P, chain I, )
42: VAR_027464 (T211I, chain I, )
43: VAR_071203 (V216G, chain I, )
44: VAR_027465 (I219T, chain I, )
45: VAR_027466 (W225R, chain I, )
46: VAR_027467 (F229L, chain I, )
47: VAR_007060 (E237K, chain I, )
48: VAR_007062 (M251I, chain I, )
49: VAR_027468 (M251V, chain I, )
50: VAR_071204 (R261P, chain I, )
51: VAR_007063 (L270P, chain I, )
52: VAR_007064 (I284N, chain I, )
53: VAR_027469 (S291P, chain I, )
54: VAR_007065 (E302K, chain I, )
55: VAR_007067 (S349P, chain I, )
56: VAR_007068 (R359Q, chain I, )
57: VAR_027470 (S365P, chain I, )
58: VAR_027471 (D366H, chain I, )
59: VAR_071205 (H369R, chain I, )
60: VAR_027472 (S380R, chain I, )
61: VAR_007069 (A382T, chain I, )
62: VAR_007070 (A384P, chain I, )
63: VAR_007071 (A384S, chain I, )
64: VAR_007072 (A387V, chain I, )
65: VAR_007073 (G392D, chain I, )
66: VAR_007075 (R393C, chain I, )
67: VAR_007074 (R393H, chain I, )
68: VAR_007076 (R393P, chain I, )
69: VAR_007077 (S394L, chain I, )
70: VAR_007078 (F402C, chain I, )
71: VAR_007080 (F402L, chain I, )
72: VAR_007079 (F402S, chain I, )
73: VAR_007081 (A404T, chain I, )
74: VAR_007082 (N405K, chain I, )
75: VAR_009258 (R406G, chain I, )
76: VAR_007083 (R406M, chain I, )
77: VAR_071206 (P407A, chain I, )
78: VAR_007084 (P407L, chain I, )
79: VAR_007085 (P407T, chain I, )
80: VAR_027473 (L409P, chain I, )
81: VAR_007086 (I421T, chain I, )
82: VAR_007087 (G424R, chain I, )
83: VAR_007088 (R425T, chain I, )
84: VAR_007090 (A427D, chain I, )
85: VAR_007091 (P429L, chain I, )
86: VAR_007092 (C430F, chain I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007033
I
39
N
ANT3_HUMAN
Disease (AT3D)
28929468
I
I
7
N
02
UniProt
VAR_007034
M
52
T
ANT3_HUMAN
Unclassified
---
I
M
20
T
03
UniProt
VAR_071199
C
53
F
ANT3_HUMAN
Disease (AT3D)
---
I
C
21
F
04
UniProt
VAR_007035
R
56
C
ANT3_HUMAN
Disease (AT3D)
28929469
I
R
24
C
05
UniProt
VAR_007036
P
73
L
ANT3_HUMAN
Disease (AT3D)
121909551
I
P
41
L
06
UniProt
VAR_007037
R
79
C
ANT3_HUMAN
Disease (AT3D)
---
I
R
47
C
07
UniProt
VAR_007038
R
79
H
ANT3_HUMAN
Disease (AT3D)
121909552
I
R
47
H
08
UniProt
VAR_007039
R
79
S
ANT3_HUMAN
Disease (AT3D)
---
I
R
47
S
09
UniProt
VAR_007041
R
89
C
ANT3_HUMAN
Disease (AT3D)
147266200
I
R
57
C
10
UniProt
VAR_007042
F
90
L
ANT3_HUMAN
Disease (AT3D)
---
I
F
58
L
11
UniProt
VAR_027452
Y
95
C
ANT3_HUMAN
Disease (AT3D)
---
I
Y
63
C
12
UniProt
VAR_012316
Y
95
S
ANT3_HUMAN
Disease (AT3D)
---
I
Y
63
S
13
UniProt
VAR_027453
L
98
P
ANT3_HUMAN
Disease (AT3D)
---
I
L
66
P
14
UniProt
VAR_007044
P
112
T
ANT3_HUMAN
Disease (AT3D)
---
I
P
80
T
15
UniProt
VAR_027454
M
121
K
ANT3_HUMAN
Disease (AT3D)
---
I
M
89
K
16
UniProt
VAR_071200
G
125
D
ANT3_HUMAN
Disease (AT3D)
---
I
G
93
D
17
UniProt
VAR_027455
C
127
R
ANT3_HUMAN
Disease (AT3D)
---
I
C
95
R
18
UniProt
VAR_007045
L
131
F
ANT3_HUMAN
Disease (AT3D)
---
I
L
99
F
19
UniProt
VAR_007046
L
131
V
ANT3_HUMAN
Disease (AT3D)
---
I
L
99
V
20
UniProt
VAR_007047
Q
133
K
ANT3_HUMAN
Disease (AT3D)
---
I
Q
101
K
21
UniProt
VAR_027456
K
146
E
ANT3_HUMAN
Disease (AT3D)
---
I
K
114
E
22
UniProt
VAR_013085
T
147
A
ANT3_HUMAN
Polymorphism
2227606
I
T
115
A
23
UniProt
VAR_007049
S
148
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
116
P
24
UniProt
VAR_007050
Q
150
P
ANT3_HUMAN
Disease (AT3D)
---
I
Q
118
P
25
UniProt
VAR_007051
H
152
Y
ANT3_HUMAN
Disease (AT3D)
---
I
H
120
Y
26
UniProt
VAR_007053
L
158
P
ANT3_HUMAN
Disease (AT3D)
---
I
L
126
P
27
UniProt
VAR_027457
C
160
Y
ANT3_HUMAN
Disease (AT3D)
---
I
C
128
Y
28
UniProt
VAR_007054
R
161
Q
ANT3_HUMAN
Disease (AT3D)
---
I
R
129
Q
29
UniProt
VAR_012750
N
167
T
ANT3_HUMAN
Polymorphism
---
I
N
135
T
30
UniProt
VAR_071201
S
170
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
138
P
31
UniProt
VAR_027458
L
178
H
ANT3_HUMAN
Disease (AT3D)
---
I
L
146
H
32
UniProt
VAR_027459
F
179
L
ANT3_HUMAN
Disease (AT3D)
---
I
F
147
L
33
UniProt
VAR_007055
Y
190
C
ANT3_HUMAN
Polymorphism
---
I
Y
158
C
34
UniProt
VAR_007056
Y
198
C
ANT3_HUMAN
Disease (AT3D)
---
I
Y
166
C
35
UniProt
VAR_027460
Y
198
H
ANT3_HUMAN
Disease (AT3D)
---
I
Y
166
H
36
UniProt
VAR_027461
S
214
F
ANT3_HUMAN
Disease (AT3D)
---
I
S
182
F
37
UniProt
VAR_007057
S
214
Y
ANT3_HUMAN
Disease (AT3D)
---
I
S
182
Y
38
UniProt
VAR_071202
I
218
N
ANT3_HUMAN
Disease (AT3D)
---
I
I
186
N
39
UniProt
VAR_007059
N
219
D
ANT3_HUMAN
Disease (AT3D)
---
I
N
187
D
40
UniProt
VAR_007058
N
219
K
ANT3_HUMAN
Disease (AT3D)
---
I
N
187
K
41
UniProt
VAR_027463
S
223
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
191
P
42
UniProt
VAR_027464
T
243
I
ANT3_HUMAN
Disease (AT3D)
---
I
T
211
I
43
UniProt
VAR_071203
V
248
G
ANT3_HUMAN
Disease (AT3D)
---
I
V
216
G
44
UniProt
VAR_027465
I
251
T
ANT3_HUMAN
Disease (AT3D)
---
I
I
219
T
45
UniProt
VAR_027466
W
257
R
ANT3_HUMAN
Disease (AT3D)
---
I
W
225
R
46
UniProt
VAR_027467
F
261
L
ANT3_HUMAN
Disease (AT3D)
---
I
F
229
L
47
UniProt
VAR_007060
E
269
K
ANT3_HUMAN
Disease (AT3D)
---
I
E
237
K
48
UniProt
VAR_007062
M
283
I
ANT3_HUMAN
Disease (AT3D)
---
I
M
251
I
49
UniProt
VAR_027468
M
283
V
ANT3_HUMAN
Disease (AT3D)
---
I
M
251
V
50
UniProt
VAR_071204
R
293
P
ANT3_HUMAN
Disease (AT3D)
---
I
R
261
P
51
UniProt
VAR_007063
L
302
P
ANT3_HUMAN
Disease (AT3D)
---
I
L
270
P
52
UniProt
VAR_007064
I
316
N
ANT3_HUMAN
Disease (AT3D)
---
I
I
284
N
53
UniProt
VAR_027469
S
323
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
291
P
54
UniProt
VAR_007065
E
334
K
ANT3_HUMAN
Disease (AT3D)
---
I
E
302
K
55
UniProt
VAR_007067
S
381
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
349
P
56
UniProt
VAR_007068
R
391
Q
ANT3_HUMAN
Polymorphism
---
I
R
359
Q
57
UniProt
VAR_027470
S
397
P
ANT3_HUMAN
Disease (AT3D)
---
I
S
365
P
58
UniProt
VAR_027471
D
398
H
ANT3_HUMAN
Disease (AT3D)
---
I
D
366
H
59
UniProt
VAR_071205
H
401
R
ANT3_HUMAN
Disease (AT3D)
---
I
H
369
R
60
UniProt
VAR_027472
S
412
R
ANT3_HUMAN
Disease (AT3D)
---
I
S
380
R
61
UniProt
VAR_007069
A
414
T
ANT3_HUMAN
Disease (AT3D)
---
I
A
382
T
62
UniProt
VAR_007070
A
416
P
ANT3_HUMAN
Disease (AT3D)
28930978
I
A
384
P
63
UniProt
VAR_007071
A
416
S
ANT3_HUMAN
Disease (AT3D)
121909548
I
A
384
S
64
UniProt
VAR_007072
A
419
V
ANT3_HUMAN
Disease (AT3D)
---
I
A
387
V
65
UniProt
VAR_007073
G
424
D
ANT3_HUMAN
Disease (AT3D)
---
I
G
392
D
66
UniProt
VAR_007075
R
425
C
ANT3_HUMAN
Disease (AT3D)
121909554
I
R
393
C
67
UniProt
VAR_007074
R
425
H
ANT3_HUMAN
Disease (AT3D)
---
I
R
393
H
68
UniProt
VAR_007076
R
425
P
ANT3_HUMAN
Disease (AT3D)
---
I
R
393
P
69
UniProt
VAR_007077
S
426
L
ANT3_HUMAN
Disease (AT3D)
---
I
S
394
L
70
UniProt
VAR_007078
F
434
C
ANT3_HUMAN
Disease (AT3D)
---
I
F
402
C
71
UniProt
VAR_007080
F
434
L
ANT3_HUMAN
Disease (AT3D)
---
I
F
402
L
72
UniProt
VAR_007079
F
434
S
ANT3_HUMAN
Disease (AT3D)
---
I
F
402
S
73
UniProt
VAR_007081
A
436
T
ANT3_HUMAN
Disease (AT3D)
---
I
A
404
T
74
UniProt
VAR_007082
N
437
K
ANT3_HUMAN
Disease (AT3D)
---
I
N
405
K
75
UniProt
VAR_009258
R
438
G
ANT3_HUMAN
Disease (AT3D)
---
I
R
406
G
76
UniProt
VAR_007083
R
438
M
ANT3_HUMAN
Disease (AT3D)
---
I
R
406
M
77
UniProt
VAR_071206
P
439
A
ANT3_HUMAN
Disease (AT3D)
---
I
P
407
A
78
UniProt
VAR_007084
P
439
L
ANT3_HUMAN
Disease (AT3D)
---
I
P
407
L
79
UniProt
VAR_007085
P
439
T
ANT3_HUMAN
Disease (AT3D)
---
I
P
407
T
80
UniProt
VAR_027473
L
441
P
ANT3_HUMAN
Disease (AT3D)
---
I
L
409
P
81
UniProt
VAR_007086
I
453
T
ANT3_HUMAN
Disease (AT3D)
---
I
I
421
T
82
UniProt
VAR_007087
G
456
R
ANT3_HUMAN
Disease (AT3D)
---
I
G
424
R
83
UniProt
VAR_007088
R
457
T
ANT3_HUMAN
Disease (AT3D)
---
I
R
425
T
84
UniProt
VAR_007090
A
459
D
ANT3_HUMAN
Disease (AT3D)
---
I
A
427
D
85
UniProt
VAR_007091
P
461
L
ANT3_HUMAN
Disease (AT3D)
---
I
P
429
L
86
UniProt
VAR_007092
C
462
F
ANT3_HUMAN
Disease (AT3D)
---
I
C
430
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (I:402-412)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
ANT3_HUMAN
434-444
1
I:402-412
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oyhi_ (I:)
1b: SCOP_d1oyhl_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
Serpins
(100)
Protein domain
:
Antithrombin
(28)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1oyhi_
I:
1b
d1oyhl_
L:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1oyhI02 (I:12-224,I:321-377)
1b: CATH_1oyhL02 (L:13-224,L:321-377)
2a: CATH_1oyhL01 (L:225-320,L:383-429)
2b: CATH_1oyhI01 (I:225-320,I:383-430)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Human (Homo sapiens)
(80)
1a
1oyhI02
I:12-224,I:321-377
1b
1oyhL02
L:13-224,L:321-377
Class
:
Mainly Beta
(13760)
Architecture
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Roll
(1513)
Topology
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Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Human (Homo sapiens)
(81)
2a
1oyhL01
L:225-320,L:383-429
2b
1oyhI01
I:225-320,I:383-430
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Serpin_1oyhL01 (L:53-429)
1b: PFAM_Serpin_1oyhL02 (L:53-429)
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Clan
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no clan defined [family: Serpin]
(63)
Family
:
Serpin
(63)
Homo sapiens (Human)
(41)
1a
Serpin-1oyhL01
L:53-429
1b
Serpin-1oyhL02
L:53-429
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Chain I
Asymmetric Unit 1
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