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1OXV
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Authors
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnissen
Date
:
03 Apr 03 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: D (1x)
Keywords
:
Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnisse
Crystal Structures Of The Atpase Subunit Of The Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free And Nucleotide-Bound Conformations
J. Mol. Biol. V. 330 343 2003
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 44)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
1c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2af: IODIDE ION (IODaf)
2ag: IODIDE ION (IODag)
2ah: IODIDE ION (IODah)
2ai: IODIDE ION (IODai)
2aj: IODIDE ION (IODaj)
2ak: IODIDE ION (IODak)
2al: IODIDE ION (IODal)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
3
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
IOD
38
Ligand/Ion
IODIDE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:45 , GLN D:89 , ANP D:1106 , HOH D:1341 , HOH D:1350
BINDING SITE FOR RESIDUE MG D 1101
02
AC2
SOFTWARE
THR A:45 , GLN A:89 , ANP A:1104 , HOH A:1323 , HOH A:1334 , HOH A:1343
BINDING SITE FOR RESIDUE MG A 1102
03
AC3
SOFTWARE
THR B:45 , ANP B:1105 , HOH B:1280 , HOH B:1291 , HOH B:1375
BINDING SITE FOR RESIDUE MG B 1103
04
AC4
SOFTWARE
LYS A:17 , LEU A:283 , HOH A:1353
BINDING SITE FOR RESIDUE IOD A 1201
05
AC5
SOFTWARE
ILE A:26
BINDING SITE FOR RESIDUE IOD A 1202
06
AC6
SOFTWARE
ARG D:67 , LYS D:83 , HOH D:1240
BINDING SITE FOR RESIDUE IOD D 1203
07
AC7
SOFTWARE
GLN D:147
BINDING SITE FOR RESIDUE IOD D 1204
08
AC8
SOFTWARE
PHE D:88
BINDING SITE FOR RESIDUE IOD D 1205
09
AC9
SOFTWARE
LEU A:151
BINDING SITE FOR RESIDUE IOD A 1206
10
BC1
SOFTWARE
TYR D:94 , ASN D:96
BINDING SITE FOR RESIDUE IOD D 1208
11
BC2
SOFTWARE
SER D:234
BINDING SITE FOR RESIDUE IOD D 1209
12
BC3
SOFTWARE
LYS B:14 , HOH B:1433
BINDING SITE FOR RESIDUE IOD B 1210
13
BC4
SOFTWARE
LYS B:17 , LEU B:283
BINDING SITE FOR RESIDUE IOD B 1211
14
BC5
SOFTWARE
LYS D:17 , LEU D:283
BINDING SITE FOR RESIDUE IOD D 1215
15
BC6
SOFTWARE
ARG A:67 , ARG A:82 , HOH A:1519
BINDING SITE FOR RESIDUE IOD A 1217
16
BC7
SOFTWARE
PHE A:88
BINDING SITE FOR RESIDUE IOD A 1218
17
BC8
SOFTWARE
SER A:234
BINDING SITE FOR RESIDUE IOD A 1219
18
BC9
SOFTWARE
LYS B:15
BINDING SITE FOR RESIDUE IOD B 1220
19
CC1
SOFTWARE
IOD B:1236 , HOH B:1341
BINDING SITE FOR RESIDUE IOD B 1221
20
CC2
SOFTWARE
ARG D:49 , PHE D:88
BINDING SITE FOR RESIDUE IOD D 1222
21
CC3
SOFTWARE
SER B:234 , HOH B:1295
BINDING SITE FOR RESIDUE IOD B 1223
22
CC4
SOFTWARE
HOH B:1467
BINDING SITE FOR RESIDUE IOD B 1226
23
CC5
SOFTWARE
VAL A:303 , ILE A:304
BINDING SITE FOR RESIDUE IOD A 1227
24
CC6
SOFTWARE
HOH A:1446 , HOH A:1497
BINDING SITE FOR RESIDUE IOD A 1228
25
CC7
SOFTWARE
HOH A:1348
BINDING SITE FOR RESIDUE IOD A 1229
26
CC8
SOFTWARE
HOH A:1384
BINDING SITE FOR RESIDUE IOD A 1230
27
CC9
SOFTWARE
PRO A:95 , ASN A:96
BINDING SITE FOR RESIDUE IOD A 1232
28
DC1
SOFTWARE
LYS D:344
BINDING SITE FOR RESIDUE IOD D 1233
29
DC2
SOFTWARE
HOH D:1328 , HOH D:1397 , HOH D:1433
BINDING SITE FOR RESIDUE IOD D 1234
30
DC3
SOFTWARE
LYS B:344
BINDING SITE FOR RESIDUE IOD B 1235
31
DC4
SOFTWARE
ARG B:82 , IOD B:1221
BINDING SITE FOR RESIDUE IOD B 1236
32
DC5
SOFTWARE
GLY A:144 , ARG A:148 , HOH A:1386
BINDING SITE FOR RESIDUE IOD A 1238
33
DC6
SOFTWARE
PHE A:13 , ALA A:20 , SER A:40 , GLY A:41 , ALA A:42 , GLY A:43 , LYS A:44 , THR A:45 , THR A:46 , GLN A:89 , GLU A:166 , MG A:1102 , HOH A:1248 , HOH A:1262 , HOH A:1280 , HOH A:1323 , HOH A:1334 , HOH A:1343 , HOH A:1362 , HOH A:1369 , HOH A:1403 , HOH A:1480
BINDING SITE FOR RESIDUE ANP A 1104
34
DC7
SOFTWARE
PHE B:13 , ALA B:20 , SER B:40 , GLY B:41 , ALA B:42 , GLY B:43 , LYS B:44 , THR B:45 , THR B:46 , GLU B:166 , MG B:1103 , HOH B:1247 , HOH B:1280 , HOH B:1291 , HOH B:1337 , HOH B:1364 , HOH B:1375 , HOH B:1425 , HOH B:1464
BINDING SITE FOR RESIDUE ANP B 1105
35
DC8
SOFTWARE
PHE D:13 , ALA D:20 , SER D:40 , GLY D:41 , ALA D:42 , GLY D:43 , LYS D:44 , THR D:45 , THR D:46 , GLN D:89 , GLU D:166 , MG D:1101 , HOH D:1243 , HOH D:1295 , HOH D:1334 , HOH D:1341 , HOH D:1350 , HOH D:1353 , HOH D:1363 , HOH D:1364 , HOH D:1541
BINDING SITE FOR RESIDUE ANP D 1106
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1oxva1 (A:243-353)
1b: SCOP_d1oxvb1 (B:243-353)
1c: SCOP_d1oxvd1 (D:243-353)
2a: SCOP_d1oxva2 (A:1-242)
2b: SCOP_d1oxvb2 (B:1-242)
2c: SCOP_d1oxvd2 (D:1-242)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
1a
d1oxva1
A:243-353
1b
d1oxvb1
B:243-353
1c
d1oxvd1
D:243-353
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
2a
d1oxva2
A:1-242
2b
d1oxvb2
B:1-242
2c
d1oxvd2
D:1-242
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1oxvA01 (A:1-244)
1b: CATH_1oxvD01 (D:1-244)
1c: CATH_1oxvB01 (B:1-244)
2a: CATH_1oxvA03 (A:245-279,A:343-353)
2b: CATH_1oxvB03 (B:245-279,B:343-353)
2c: CATH_1oxvD03 (D:245-279,D:343-353)
3a: CATH_1oxvA02 (A:297-341)
3b: CATH_1oxvB02 (B:297-341)
3c: CATH_1oxvD02 (D:297-341)
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)
(
)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Sulfolobus solfataricus. Organism_taxid: 2287.
(12)
1a
1oxvA01
A:1-244
1b
1oxvD01
D:1-244
1c
1oxvB01
B:1-244
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
2a
1oxvA03
A:245-279,A:343-353
2b
1oxvB03
B:245-279,B:343-353
2c
1oxvD03
D:245-279,D:343-353
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
3a
1oxvA02
A:297-341
3b
1oxvB02
B:297-341
3c
1oxvD02
D:297-341
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_TOBE_2_1oxvD01 (D:274-350)
1b: PFAM_TOBE_2_1oxvD02 (D:274-350)
1c: PFAM_TOBE_2_1oxvD03 (D:274-350)
2a: PFAM_ABC_tran_1oxvD04 (D:45-169)
2b: PFAM_ABC_tran_1oxvD05 (D:45-169)
2c: PFAM_ABC_tran_1oxvD06 (D:45-169)
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Clans
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)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
OB
(224)
Family
:
TOBE_2
(15)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(4)
1a
TOBE_2-1oxvD01
D:274-350
1b
TOBE_2-1oxvD02
D:274-350
1c
TOBE_2-1oxvD03
D:274-350
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(5)
2a
ABC_tran-1oxvD04
D:45-169
2b
ABC_tran-1oxvD05
D:45-169
2c
ABC_tran-1oxvD06
D:45-169
[
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