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1OXU
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Authors
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnissen
Date
:
03 Apr 03 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnisse
Crystal Structures Of The Atpase Subunit Of The Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free And Nucleotide-Bound Conformations
J. Mol. Biol. V. 330 343 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 66)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2af: IODIDE ION (IODaf)
2ag: IODIDE ION (IODag)
2ah: IODIDE ION (IODah)
2ai: IODIDE ION (IODai)
2aj: IODIDE ION (IODaj)
2ak: IODIDE ION (IODak)
2al: IODIDE ION (IODal)
2am: IODIDE ION (IODam)
2an: IODIDE ION (IODan)
2ao: IODIDE ION (IODao)
2ap: IODIDE ION (IODap)
2aq: IODIDE ION (IODaq)
2ar: IODIDE ION (IODar)
2as: IODIDE ION (IODas)
2at: IODIDE ION (IODat)
2au: IODIDE ION (IODau)
2av: IODIDE ION (IODav)
2aw: IODIDE ION (IODaw)
2ax: IODIDE ION (IODax)
2ay: IODIDE ION (IODay)
2az: IODIDE ION (IODaz)
2b: IODIDE ION (IODb)
2ba: IODIDE ION (IODba)
2bb: IODIDE ION (IODbb)
2bc: IODIDE ION (IODbc)
2bd: IODIDE ION (IODbd)
2be: IODIDE ION (IODbe)
2bf: IODIDE ION (IODbf)
2bg: IODIDE ION (IODbg)
2bh: IODIDE ION (IODbh)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
3
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
IOD
60
Ligand/Ion
IODIDE ION
3
MG
3
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(53, 53)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR C:45 , ADP C:1487 , HOH C:2829 , HOH C:2911 , HOH C:3073 , HOH C:3074
BINDING SITE FOR RESIDUE MG C 1501
02
AC2
SOFTWARE
THR A:45 , ADP A:1486 , HOH A:3014 , HOH A:3064 , HOH A:3093 , HOH A:3094
BINDING SITE FOR RESIDUE MG A 1502
03
AC3
SOFTWARE
THR B:45 , ADP B:1488 , HOH B:2847 , HOH B:2865 , HOH B:2915 , HOH B:2950
BINDING SITE FOR RESIDUE MG B 1503
04
AC4
SOFTWARE
LYS C:17 , LEU C:283
BINDING SITE FOR RESIDUE IOD C 2001
05
AC5
SOFTWARE
LYS B:17 , LEU B:283 , SER B:328
BINDING SITE FOR RESIDUE IOD B 2002
06
AC6
SOFTWARE
LYS A:17 , LEU A:283 , SER A:328
BINDING SITE FOR RESIDUE IOD A 2003
07
AC7
SOFTWARE
ARG C:67 , ARG C:82 , HOH C:2833
BINDING SITE FOR RESIDUE IOD C 2004
08
AC8
SOFTWARE
ARG A:67 , ARG A:82
BINDING SITE FOR RESIDUE IOD A 2006
09
AC9
SOFTWARE
GLN A:147
BINDING SITE FOR RESIDUE IOD A 2007
10
BC1
SOFTWARE
GLN C:147 , LEU C:151
BINDING SITE FOR RESIDUE IOD C 2008
11
BC2
SOFTWARE
PHE A:88
BINDING SITE FOR RESIDUE IOD A 2009
12
BC3
SOFTWARE
ILE A:26 , HOH B:2888
BINDING SITE FOR RESIDUE IOD A 2010
13
BC4
SOFTWARE
ILE A:304
BINDING SITE FOR RESIDUE IOD A 2011
14
BC5
SOFTWARE
SER B:234
BINDING SITE FOR RESIDUE IOD B 2012
15
BC6
SOFTWARE
PHE C:88
BINDING SITE FOR RESIDUE IOD C 2013
16
BC7
SOFTWARE
ASN C:135 , HOH C:2929
BINDING SITE FOR RESIDUE IOD C 2014
17
BC8
SOFTWARE
MET B:86
BINDING SITE FOR RESIDUE IOD B 2015
18
BC9
SOFTWARE
LYS A:184
BINDING SITE FOR RESIDUE IOD A 2016
19
CC1
SOFTWARE
ARG B:67 , ARG B:82 , LYS B:83 , IOD B:2019
BINDING SITE FOR RESIDUE IOD B 2017
20
CC2
SOFTWARE
TYR C:94 , ASN C:96
BINDING SITE FOR RESIDUE IOD C 2018
21
CC3
SOFTWARE
ARG B:67 , IOD B:2017
BINDING SITE FOR RESIDUE IOD B 2019
22
CC4
SOFTWARE
VAL C:303 , ILE C:304
BINDING SITE FOR RESIDUE IOD C 2020
23
CC5
SOFTWARE
ILE B:127 , ARG B:189
BINDING SITE FOR RESIDUE IOD B 2021
24
CC6
SOFTWARE
MET A:86
BINDING SITE FOR RESIDUE IOD A 2023
25
CC7
SOFTWARE
PHE A:105 , HOH A:3193
BINDING SITE FOR RESIDUE IOD A 2339
26
CC8
SOFTWARE
SER B:328
BINDING SITE FOR RESIDUE IOD B 2386
27
CC9
SOFTWARE
GLY A:144 , HOH A:3151
BINDING SITE FOR RESIDUE IOD A 2387
28
DC1
SOFTWARE
SER C:234 , GLN C:236
BINDING SITE FOR RESIDUE IOD C 2438
29
DC2
SOFTWARE
ARG C:148 , HOH C:3002
BINDING SITE FOR RESIDUE IOD C 2536
30
DC3
SOFTWARE
HOH C:2882 , HOH C:3068
BINDING SITE FOR RESIDUE IOD C 2541
31
DC4
SOFTWARE
HOH C:3095
BINDING SITE FOR RESIDUE IOD C 2682
32
DC5
SOFTWARE
SER A:234
BINDING SITE FOR RESIDUE IOD A 2683
33
DC6
SOFTWARE
GLN A:146
BINDING SITE FOR RESIDUE IOD A 2816
34
DC7
SOFTWARE
LYS C:15
BINDING SITE FOR RESIDUE IOD C 2823
35
DC8
SOFTWARE
IOD A:2845
BINDING SITE FOR RESIDUE IOD A 2828
36
DC9
SOFTWARE
LYS B:15
BINDING SITE FOR RESIDUE IOD B 2831
37
EC1
SOFTWARE
LYS A:15
BINDING SITE FOR RESIDUE IOD A 2832
38
EC2
SOFTWARE
IOD A:2828 , HOH A:3222
BINDING SITE FOR RESIDUE IOD A 2845
39
EC3
SOFTWARE
HOH A:3242
BINDING SITE FOR RESIDUE IOD A 2986
40
EC4
SOFTWARE
HOH C:3092
BINDING SITE FOR RESIDUE IOD C 2049
41
EC5
SOFTWARE
TYR A:94 , ASN A:96
BINDING SITE FOR RESIDUE IOD A 2153
42
EC6
SOFTWARE
VAL B:303 , ILE B:304
BINDING SITE FOR RESIDUE IOD B 2037
43
EC7
SOFTWARE
PRO C:201 , ALA C:202
BINDING SITE FOR RESIDUE IOD C 2233
44
EC8
SOFTWARE
HOH C:2927
BINDING SITE FOR RESIDUE IOD C 2239
45
EC9
SOFTWARE
VAL A:12 , HOH A:3116
BINDING SITE FOR RESIDUE IOD A 2288
46
FC1
SOFTWARE
HOH B:2934
BINDING SITE FOR RESIDUE IOD B 2337
47
FC2
SOFTWARE
PHE C:205 , ILE C:241
BINDING SITE FOR RESIDUE IOD C 2253
48
FC3
SOFTWARE
GLU B:61
BINDING SITE FOR RESIDUE IOD B 2198
49
FC4
SOFTWARE
ARG B:33 , SER B:188 , HOH B:2992
BINDING SITE FOR RESIDUE IOD B 2218
50
FC5
SOFTWARE
LYS C:14 , ASP C:329
BINDING SITE FOR RESIDUE IOD C 2237
51
FC6
SOFTWARE
PHE A:13 , ALA A:20 , SER A:40 , GLY A:41 , ALA A:42 , GLY A:43 , LYS A:44 , THR A:45 , THR A:46 , MG A:1502 , HOH A:2998 , HOH A:3014 , HOH A:3064 , HOH A:3094 , HOH A:3098 , HOH A:3119 , HOH A:3143 , HOH A:3163 , HOH A:3168 , HOH A:3176 , HOH A:3179 , HOH A:3208
BINDING SITE FOR RESIDUE ADP A 1486
52
FC7
SOFTWARE
PHE C:13 , ALA C:20 , SER C:40 , GLY C:41 , ALA C:42 , GLY C:43 , LYS C:44 , THR C:45 , THR C:46 , MG C:1501 , HOH C:2911 , HOH C:2936 , HOH C:2953 , HOH C:2959 , HOH C:2968 , HOH C:3021 , HOH C:3028 , HOH C:3047 , HOH C:3074 , HOH C:3080
BINDING SITE FOR RESIDUE ADP C 1487
53
FC8
SOFTWARE
PHE B:13 , ALA B:20 , GLY B:41 , ALA B:42 , GLY B:43 , LYS B:44 , THR B:45 , THR B:46 , MG B:1503 , HOH B:2915 , HOH B:2943 , HOH B:2950 , HOH B:2986 , HOH B:2989 , HOH B:3005 , HOH B:3029
BINDING SITE FOR RESIDUE ADP B 1488
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1oxua1 (A:243-353)
1b: SCOP_d1oxub1 (B:243-353)
1c: SCOP_d1oxuc1 (C:243-353)
2a: SCOP_d1oxua2 (A:1-242)
2b: SCOP_d1oxub2 (B:1-242)
2c: SCOP_d1oxuc2 (C:1-242)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
1a
d1oxua1
A:243-353
1b
d1oxub1
B:243-353
1c
d1oxuc1
C:243-353
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
2a
d1oxua2
A:1-242
2b
d1oxub2
B:1-242
2c
d1oxuc2
C:1-242
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1oxuA01 (A:1-244)
1b: CATH_1oxuB01 (B:1-244)
1c: CATH_1oxuC01 (C:1-244)
2a: CATH_1oxuA03 (A:245-279,A:343-353)
2b: CATH_1oxuB03 (B:245-279,B:343-353)
2c: CATH_1oxuC03 (C:245-279,C:343-353)
3a: CATH_1oxuA02 (A:297-341)
3b: CATH_1oxuC02 (C:297-341)
3c: CATH_1oxuB02 (B:297-341)
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Topologies
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(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Sulfolobus solfataricus. Organism_taxid: 2287.
(12)
1a
1oxuA01
A:1-244
1b
1oxuB01
B:1-244
1c
1oxuC01
C:1-244
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
2a
1oxuA03
A:245-279,A:343-353
2b
1oxuB03
B:245-279,B:343-353
2c
1oxuC03
C:245-279,C:343-353
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
3a
1oxuA02
A:297-341
3b
1oxuC02
C:297-341
3c
1oxuB02
B:297-341
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_TOBE_2_1oxuC01 (C:274-350)
1b: PFAM_TOBE_2_1oxuC02 (C:274-350)
1c: PFAM_TOBE_2_1oxuC03 (C:274-350)
2a: PFAM_ABC_tran_1oxuC04 (C:45-169)
2b: PFAM_ABC_tran_1oxuC05 (C:45-169)
2c: PFAM_ABC_tran_1oxuC06 (C:45-169)
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Families
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)
Organisms
(
)
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)
Clan
:
OB
(224)
Family
:
TOBE_2
(15)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(4)
1a
TOBE_2-1oxuC01
C:274-350
1b
TOBE_2-1oxuC02
C:274-350
1c
TOBE_2-1oxuC03
C:274-350
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(5)
2a
ABC_tran-1oxuC04
C:45-169
2b
ABC_tran-1oxuC05
C:45-169
2c
ABC_tran-1oxuC06
C:45-169
[
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