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1OXN
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 10 (38 KB)
Biol.Unit 11 (21 KB)
Biol.Unit 12 (3 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (21 KB)
Biol.Unit 4 (22 KB)
Biol.Unit 5 (21 KB)
Biol.Unit 6 (91 KB)
Biol.Unit 7 (56 KB)
Biol.Unit 8 (39 KB)
Biol.Unit 9 (39 KB)
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(1)
Title
:
STRUCTURE AND FUNCTION ANALYSIS OF PEPTIDE ANTAGONISTS OF MELANOMA INHIBITOR OF APOPTOSIS (ML-IAP)
Authors
:
M. C. Franklin, S. Kadkhodayan, H. Ackerly, D. Alexandru, M. D. Distefa L. O. Elliott, J. A. Flygare, D. Vucic, K. Deshayes, W. J. Fairbrother
Date
:
03 Apr 03 (Deposition) - 26 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E,F (1x)
Biol. Unit 6: A,B,C,D,E,F (1x)
Biol. Unit 7: A,D,E,F (1x)
Biol. Unit 8: B,C (1x)
Biol. Unit 9: D,E,F (1x)
Biol. Unit 10: A,D (1x)
Biol. Unit 11: E (1x)
Biol. Unit 12: F (1x)
Keywords
:
Zinc Binding, Peptide Complex, Apoptosis Inhibition, Apoptosis- Peptide Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Franklin, S. Kadkhodayan, H. Ackerly, D. Alexandru, M. D. Distefano, L. O. Elliott, J. A. Flygare, G. Mausisa, D. C. Okawa, D. Ong, D. Vucic, K. Deshayes, W. J. Fairbrother
Structure And Function Analysis Of Peptide Antagonists Of Melanoma Inhibitor Of Apoptosis (Ml-Iap)
Biochemistry V. 42 8223 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
P33
1
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
2
ZN
5
Ligand/Ion
ZINC ION
[
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]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:124 , CYS A:127 , HIS A:144 , CYS A:151
BINDING SITE FOR RESIDUE ZN A 1001
2
AC2
SOFTWARE
CYS B:124 , CYS B:127 , HIS B:144 , CYS B:151
BINDING SITE FOR RESIDUE ZN B 1002
3
AC3
SOFTWARE
CYS C:124 , CYS C:127 , HIS C:144 , CYS C:151
BINDING SITE FOR RESIDUE ZN C 1003
4
AC4
SOFTWARE
CYS D:124 , CYS D:127 , HIS D:144 , CYS D:151
BINDING SITE FOR RESIDUE ZN D 1004
5
AC5
SOFTWARE
CYS E:124 , CYS E:127 , HIS E:144 , CYS E:151
BINDING SITE FOR RESIDUE ZN E 1005
6
AC6
SOFTWARE
PHE A:81 , TYR A:128 , PHE B:81 , GLY B:83 , LEU B:89 , TYR B:128 , ALA C:80 , TYR C:128 , ALA D:80 , PHE D:81 , PHE D:114 , THR D:116 , TYR D:128 , HOH D:1332 , HOH D:1333 , HOH D:1347 , HOH D:1359 , HOH D:1389
BINDING SITE FOR RESIDUE P33 D 1300
7
AC7
SOFTWARE
ARG D:136 , GLY E:130 , LEU E:131 , GLN E:132 , SER E:133 , ASP E:138 , GLU E:143 , TRP E:147 , HOH E:1068 , HOH E:1073 , HOH F:183
BINDING SITE FOR CHAIN F OF AEAVPWKSE PEPTIDE
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (A:87-154,B:87-154,C:87-154,D:87-15...)
2: BIR_REPEAT_2 (A:90-155,B:90-155,C:90-155,D:90-15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
BIRC7_HUMAN
87-154
5
A:87-154
B:87-154
C:87-154
D:87-154
E:87-154
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC7_HUMAN
90-155
5
A:90-155
B:90-155
C:90-155
D:90-155
E:90-155
[
close PROSITE info
]
Exons
(3, 15)
Info
All Exons
Exon 1.1 (A:71-117 | B:71-117 | C:71-117 | D...)
Exon 1.2 (A:117-150 | B:117-150 | C:117-150 ...)
Exon 1.3c (A:150-169 | B:150-171 | C:150-171 ...)
View:
Select:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3c
4: Boundary 1.3c/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000217169
1
ENSE00001386758
chr20:
61867235-61867797
563
BIRC7_HUMAN
1-117
117
5
A:71-117
B:71-117
C:71-117
D:71-117
E:78-117
47
47
47
47
40
1.2
ENST00000217169
2
ENSE00000856558
chr20:
61869255-61869354
100
BIRC7_HUMAN
117-150
34
5
A:117-150
B:117-150
C:117-150
D:117-150
E:117-150
34
34
34
34
34
1.3c
ENST00000217169
3c
ENSE00000663365
chr20:
61869748-61869829
82
BIRC7_HUMAN
150-177
28
5
A:150-169
B:150-171
C:150-171
D:150-170
E:150-171
20
22
22
21
22
1.4
ENST00000217169
4
ENSE00000663366
chr20:
61869921-61869966
46
BIRC7_HUMAN
178-193
16
0
-
-
1.5
ENST00000217169
5
ENSE00000856559
chr20:
61870514-61870585
72
BIRC7_HUMAN
193-217
25
0
-
-
1.6a
ENST00000217169
6a
ENSE00001174107
chr20:
61870710-61870962
253
BIRC7_HUMAN
217-298
82
0
-
-
1.7c
ENST00000217169
7c
ENSE00001816361
chr20:
61871608-61871859
252
BIRC7_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1oxna_ (A:)
1b: SCOP_d1oxnc_ (C:)
1c: SCOP_d1oxnd_ (D:)
1d: SCOP_d1oxne_ (E:)
1e: SCOP_d1oxnb_ (B:)
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)
(
)
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)
(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
BIR-containing protein 7 (ML-IAP, livin)
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1oxna_
A:
1b
d1oxnc_
C:
1c
d1oxnd_
D:
1d
d1oxne_
E:
1e
d1oxnb_
B:
[
close SCOP info
]
CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1oxnB00 (B:71-171)
1b: CATH_1oxnE00 (E:78-171)
1c: CATH_1oxnC00 (C:71-171)
1d: CATH_1oxnD00 (D:71-170)
1e: CATH_1oxnA00 (A:71-169)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
1a
1oxnB00
B:71-171
1b
1oxnE00
E:78-171
1c
1oxnC00
C:71-171
1d
1oxnD00
D:71-170
1e
1oxnA00
A:71-169
[
close CATH info
]
Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_BIR_1oxnE01 (E:90-155)
1b: PFAM_BIR_1oxnE02 (E:90-155)
1c: PFAM_BIR_1oxnE03 (E:90-155)
1d: PFAM_BIR_1oxnE04 (E:90-155)
1e: PFAM_BIR_1oxnE05 (E:90-155)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
BIR-like
(25)
Family
:
BIR
(25)
Homo sapiens (Human)
(24)
1a
BIR-1oxnE01
E:90-155
1b
BIR-1oxnE02
E:90-155
1c
BIR-1oxnE03
E:90-155
1d
BIR-1oxnE04
E:90-155
1e
BIR-1oxnE05
E:90-155
[
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]
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