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1OWX
Asym. Unit
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Asym.Unit (616 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL RRM OF HUMAN LA (LA225-334)
Authors
:
A. Jacks, J. Babon, G. Kelly, I. Manolaridis, P. D. Cary, S. Curry, M. R. Conte
Date
:
31 Mar 03 (Deposition) - 29 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rrm, Transcription
(Keyword Search:
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Reference
:
A. Jacks, J. Babon, G. Kelly, I. Manolaridis, P. D. Cary, S. Curry, M. R. Conte
Structure Of The C-Terminal Domain Of Human La Protein Reveals A Novel Rna Recognition Motif Coupled To A Helical Nuclear Retention Element
Structure V. 11 833 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(4, 4)
Info
All Exons
Exon 1.8e (A:222-223)
Exon 1.9c (A:224-270)
Exon 1.10b (A:271-333)
Exon 1.11 (A:333-334)
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1: Boundary 1.8c/1.8e
2: Boundary 1.8e/1.9c
3: Boundary 1.9c/1.10b
4: Boundary 1.10b/1.11
5: Boundary 1.11/1.12b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000260956
2a
ENSE00001893329
chr2:
170655322-170655486
165
LA_HUMAN
-
0
0
-
-
1.4
ENST00000260956
4
ENSE00002156069
chr2:
170657462-170657536
75
LA_HUMAN
1-22
22
0
-
-
1.5
ENST00000260956
5
ENSE00001610086
chr2:
170661984-170662087
104
LA_HUMAN
23-57
35
0
-
-
1.6a
ENST00000260956
6a
ENSE00000782038
chr2:
170662175-170662349
175
LA_HUMAN
57-115
59
0
-
-
1.7c
ENST00000260956
7c
ENSE00000782039
chr2:
170663295-170663402
108
LA_HUMAN
116-151
36
0
-
-
1.7g
ENST00000260956
7g
ENSE00002168098
chr2:
170663481-170663581
101
LA_HUMAN
152-185
34
0
-
-
1.8c
ENST00000260956
8c
ENSE00000782041
chr2:
170664992-170665063
72
LA_HUMAN
185-209
25
0
-
-
1.8e
ENST00000260956
8e
ENSE00000782042
chr2:
170665370-170665412
43
LA_HUMAN
209-223
15
1
A:222-223
2
1.9c
ENST00000260956
9c
ENSE00000782043
chr2:
170666793-170666933
141
LA_HUMAN
224-270
47
1
A:224-270
47
1.10b
ENST00000260956
10b
ENSE00000782044
chr2:
170667368-170667554
187
LA_HUMAN
271-333
63
1
A:271-333
63
1.11
ENST00000260956
11
ENSE00000782045
chr2:
170667693-170667833
141
LA_HUMAN
333-380
48
1
A:333-334
2
1.12b
ENST00000260956
12b
ENSE00001588653
chr2:
170668178-170668574
397
LA_HUMAN
380-408
29
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1owxa_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Lupus LA protein
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1owxa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1owxA00 (A:222-334)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1owxA00
A:222-334
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_3_1owxA01 (A:231-334)
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Clan
:
RRM
(206)
Family
:
RRM_3
(1)
Homo sapiens (Human)
(1)
1a
RRM_3-1owxA01
A:231-334
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