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1OWM
Asym. Unit
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Asym.Unit (87 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
DATA1:DNA PHOTOLYASE / RECEIVED X-RAYS DOSE 1.2 EXP15 PHOTONS/MM2
Authors
:
H. Komori, S. Adachi, K. Miki, A. Eker, R. Kort
Date
:
28 Mar 03 (Deposition) - 13 Apr 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Dna Repair, Flavin Enzyme, Photoreactivating Enzyme, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kort, H. Komori, S. Adachi, K. Miki, A. Eker
Dna Apophotolyase From Anacystis Nidulans: 1. 8 A Structure, 8-Hdf Reconstitution And X-Ray-Induced Fad Reduction.
Acta Crystallogr. , Sect. D V. 60 1205 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:11 , ILE A:41 , MET A:47 , ARG A:51 , LYS A:248 , PHE A:249 , HOH A:689 , HOH A:690
BINDING SITE FOR RESIDUE PO4 A 486
2
AC2
SOFTWARE
TYR A:228 , THR A:240 , SER A:241 , GLY A:242 , LEU A:243 , SER A:244 , LEU A:247 , TRP A:280 , GLU A:283 , ARG A:287 , TYR A:290 , TRP A:346 , MET A:347 , ASN A:349 , ARG A:352 , MET A:353 , PHE A:374 , LEU A:378 , ASP A:380 , GLY A:381 , ASP A:382 , ALA A:385 , ASN A:386 , GLY A:389 , TRP A:390 , HOH A:514 , HOH A:524 , HOH A:592 , HOH A:636 , HOH A:643 , HOH A:681
BINDING SITE FOR RESIDUE FAD A 485
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PHR_CRY_ALPHA_BETA (A:3-132)
2: DNA_PHOTOLYASES_1_1 (A:329-341)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHR_CRY_ALPHA_BETA
PS51645
Photolyase/cryptochrome alpha/beta domain profile.
PHR_SYNP6
3-132
1
A:3-132
2
DNA_PHOTOLYASES_1_1
PS00394
DNA photolyases class 1 signature 1.
PHR_SYNP6
329-341
1
A:329-341
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1owma1 (A:205-475)
2a: SCOP_d1owma2 (A:2-204)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cryptochrome/photolyase FAD-binding domain
(26)
Superfamily
:
Cryptochrome/photolyase FAD-binding domain
(26)
Family
:
Cryptochrome/photolyase FAD-binding domain
(20)
Protein domain
:
C-terminal domain of DNA photolyase
(13)
Synechococcus elongatus [TaxId: 32046]
(7)
1a
d1owma1
A:205-475
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cryptochrome/photolyase, N-terminal domain
(27)
Superfamily
:
Cryptochrome/photolyase, N-terminal domain
(27)
Family
:
Cryptochrome/photolyase, N-terminal domain
(17)
Protein domain
:
DNA photolyase
(13)
Synechococcus elongatus [TaxId: 32046]
(7)
2a
d1owma2
A:2-204
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1owmA01 (A:2-129)
2a: CATH_1owmA02 (A:130-164,A:210-297)
3a: CATH_1owmA03 (A:298-473)
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)
Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301.
(6)
1a
1owmA01
A:2-129
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.80, no name defined]
(16)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301.
(6)
2a
1owmA02
A:130-164,A:210-297
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3
(16)
Homologous Superfamily
:
DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3
(16)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301.
(6)
3a
1owmA03
A:298-473
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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