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Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SPOC DOMAIN OF THE HUMAN TRANSCRIPTIONAL COREPRESSOR, SHARP.
Authors
:
J. W. Schwabe, M. Ariyoshi
Date
:
28 Mar 03 (Deposition) - 19 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Alpha-Barrel, Spoc Domain, , Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. W. Schwabe, M. Ariyoshi
A Conserved Structural Motif Reveals The Essential Transcriptional Repression Function Of Spen Proteins And Their Role In Developmental Signaling
Genes Dev. V. 17 1909 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SPOC (A:3498-3664)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SPOC
PS50917
SPOC domain profile.
MINT_HUMAN
3498-3664
1
A:3498-3664
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Exons
(4, 4)
Info
All Exons
Exon 1.13 (A:3495-3503)
Exon 1.14 (A:3504-3568 (gaps))
Exon 1.15b (A:3569-3621)
Exon 1.16b (A:3622-3664)
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All Exon Boundaries
1: Boundary 1.12b/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15b
4: Boundary 1.15b/1.16b
5: Boundary 1.16b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000375759
1
ENSE00001468313
chr1:
16174359-16174645
287
MINT_HUMAN
1-28
28
0
-
-
1.2
ENST00000375759
2
ENSE00001065383
chr1:
16199311-16199631
321
MINT_HUMAN
28-135
108
0
-
-
1.4a
ENST00000375759
4a
ENSE00000955468
chr1:
16202697-16203173
477
MINT_HUMAN
135-294
160
0
-
-
1.5a
ENST00000375759
5a
ENSE00000827972
chr1:
16235816-16235976
161
MINT_HUMAN
294-348
55
0
-
-
1.6
ENST00000375759
6
ENSE00002153898
chr1:
16237596-16237796
201
MINT_HUMAN
348-415
68
0
-
-
1.7
ENST00000375759
7
ENSE00001734774
chr1:
16242623-16242774
152
MINT_HUMAN
415-465
51
0
-
-
1.8
ENST00000375759
8
ENSE00001633894
chr1:
16245421-16245546
126
MINT_HUMAN
466-507
42
0
-
-
1.9
ENST00000375759
9
ENSE00001776313
chr1:
16245899-16246012
114
MINT_HUMAN
508-545
38
0
-
-
1.10b
ENST00000375759
10b
ENSE00001771430
chr1:
16247365-16247478
114
MINT_HUMAN
546-583
38
0
-
-
1.11
ENST00000375759
11
ENSE00001597480
chr1:
16248744-16248844
101
MINT_HUMAN
584-617
34
0
-
-
1.12b
ENST00000375759
12b
ENSE00000827978
chr1:
16254586-16262761
8176
MINT_HUMAN
617-3342
2726
0
-
-
1.13
ENST00000375759
13
ENSE00000751295
chr1:
16263658-16264140
483
MINT_HUMAN
3343-3503
161
1
A:3495-3503
9
1.14
ENST00000375759
14
ENSE00000827979
chr1:
16264307-16264501
195
MINT_HUMAN
3504-3568
65
1
A:3504-3568 (gaps)
65
1.15b
ENST00000375759
15b
ENSE00000827980
chr1:
16265213-16265371
159
MINT_HUMAN
3569-3621
53
1
A:3569-3621
53
1.16b
ENST00000375759
16b
ENSE00001468270
chr1:
16265791-16266955
1165
MINT_HUMAN
3622-3664
43
1
A:3622-3664
43
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ow1a_ (A:)
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Protein Domains
(
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
SPOC domain-like
(5)
Superfamily
:
SPOC domain-like
(5)
Family
:
SPOC domain
(1)
Protein domain
:
SMART/HDAC1 associated repressor protein, SHARP
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ow1a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1ow1A00 (A:3495-3664)
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)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Ku70; Chain: A; Domain 2
(3)
Homologous Superfamily
:
[code=2.40.290.10, no name defined]
(3)
Human (Homo sapiens)
(2)
1a
1ow1A00
A:3495-3664
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SPOC_1ow1A01 (A:3509-3630)
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Clan
:
no clan defined [family: SPOC]
(1)
Family
:
SPOC
(1)
Homo sapiens (Human)
(1)
1a
SPOC-1ow1A01
A:3509-3630
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