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1OVS
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (39 KB)
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(1)
Title
:
LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE
Authors
:
R. Loris, D. Tielker, K. -E. Jaeger, L. Wyns
Date
:
27 Mar 03 (Deposition) - 09 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Lectin, Carbohydrate, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
R. Loris, D. Tielker, K. -E. Jaeger, L. Wyns
Structural Basis Of Carbohydrate Recognition By The Lectin Lecb From Pseudomonas Aeruginosa
J. Mol. Biol. V. 331 861 2003
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , SER A:22 , SER A:23 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , MAN A:202 , CA A:401 , CA A:402 , HOH A:649 , GLY B:114
BINDING SITE FOR RESIDUE MAN A 201
02
AC2
SOFTWARE
MAN A:201 , HOH C:745
BINDING SITE FOR RESIDUE MAN A 202
03
AC3
SOFTWARE
GLY A:114 , ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , ASP B:99 , ASP B:101 , ASP B:104 , MAN B:204 , CA B:403 , CA B:404 , HOH B:617
BINDING SITE FOR RESIDUE MAN B 203
04
AC4
SOFTWARE
HOH A:807 , MAN B:203
BINDING SITE FOR RESIDUE MAN B 204
05
AC5
SOFTWARE
ASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , GLY C:114 , MAN C:206 , CA C:405 , CA C:406 , HOH C:675 , HOH C:797 , GLY D:114
BINDING SITE FOR RESIDUE MAN C 205
06
AC6
SOFTWARE
GLY C:114 , MAN C:205 , THR D:45 , ASN D:46 , HOH D:628
BINDING SITE FOR RESIDUE MAN C 206
07
AC7
SOFTWARE
GLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , MAN A:201 , CA A:402
BINDING SITE FOR RESIDUE CA A 401
08
AC8
SOFTWARE
ASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , MAN A:201 , CA A:401 , GLY B:114
BINDING SITE FOR RESIDUE CA A 402
09
AC9
SOFTWARE
GLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , MAN B:203 , CA B:404
BINDING SITE FOR RESIDUE CA B 403
10
BC1
SOFTWARE
GLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , MAN B:203 , CA B:403
BINDING SITE FOR RESIDUE CA B 404
11
BC2
SOFTWARE
GLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , MAN C:205 , CA C:406
BINDING SITE FOR RESIDUE CA C 405
12
BC3
SOFTWARE
ASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , MAN C:205 , CA C:405 , GLY D:114
BINDING SITE FOR RESIDUE CA C 406
13
BC4
SOFTWARE
GLU D:95 , ASP D:99 , ASP D:104 , CA D:408 , HOH D:785 , HOH D:817
BINDING SITE FOR RESIDUE CA D 407
14
BC5
SOFTWARE
ASN D:21 , ASN D:103 , ASP D:104 , CA D:407 , HOH D:817
BINDING SITE FOR RESIDUE CA D 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ovsa_ (A:)
1b: SCOP_d1ovsb_ (B:)
1c: SCOP_d1ovsc_ (C:)
1d: SCOP_d1ovsd_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
Calcium-mediated lectin
(25)
Protein domain
:
Fucose-binding lectin II (PA-LII)
(9)
Pseudomonas aeruginosa [TaxId: 287]
(9)
1a
d1ovsa_
A:
1b
d1ovsb_
B:
1c
d1ovsc_
C:
1d
d1ovsd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ovsA00 (A:1-114)
1b: CATH_1ovsB00 (B:1-114)
1c: CATH_1ovsC00 (C:1-114)
1d: CATH_1ovsD00 (D:1-114)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Calcium-mediated lectin
(24)
Pseudomonas aeruginosa. Organism_taxid: 287.
(8)
1a
1ovsA00
A:1-114
1b
1ovsB00
B:1-114
1c
1ovsC00
C:1-114
1d
1ovsD00
D:1-114
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_1ovsD01 (D:6-113)
1b: PFAM_PA_IIL_1ovsD02 (D:6-113)
1c: PFAM_PA_IIL_1ovsD03 (D:6-113)
1d: PFAM_PA_IIL_1ovsD04 (D:6-113)
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Clans
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Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Pseudomonas aeruginosa
(17)
1a
PA-IIL-1ovsD01
D:6-113
1b
PA-IIL-1ovsD02
D:6-113
1c
PA-IIL-1ovsD03
D:6-113
1d
PA-IIL-1ovsD04
D:6-113
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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