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1OVD
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
THE K136E MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A IN COMPLEX WITH OROTATE
Authors
:
S. Norager, S. Arent, O. Bjornberg, M. Ottosen, L. Lo Leggio, K. F. Jens S. Larsen
Date
:
26 Mar 03 (Deposition) - 19 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Homodimer, Alpha-Beta Barrel, Flavoprotein, Orotate Complex, Mutant Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Norager, S. Arent, O. Bjornberg, M. Ottesen, L. Lo Leggio, K. F. Jensen, S. Larsen
Lactococcus Lactis Dihydroorotate Dehydrogenase A Mutants Reveal Important Facets Of The Enzymatic Function.
J. Biol. Chem. V. 278 28812 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: OROTIC ACID (OROa)
4b: OROTIC ACID (OROb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
GOL
5
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
ORO
2
Ligand/Ion
OROTIC ACID
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:33 , SER A:35 , HOH A:907 , HOH A:988 , HOH A:1074 , HOH A:1152
BINDING SITE FOR RESIDUE MG A 850
02
AC2
SOFTWARE
LYS B:33 , SER B:35 , HOH B:985 , HOH B:1066 , HOH B:1071
BINDING SITE FOR RESIDUE MG B 851
03
AC3
SOFTWARE
ALA A:18 , SER A:19 , GLY A:20 , LYS A:43 , SER A:44 , TYR A:58 , ASN A:67 , ASN A:127 , LYS A:164 , VAL A:192 , ASN A:193 , GLY A:221 , ILE A:224 , THR A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , ORO A:900 , HOH A:912 , HOH A:993 , HOH A:995
BINDING SITE FOR RESIDUE FMN A 800
04
AC4
SOFTWARE
ALA B:18 , SER B:19 , GLY B:20 , LYS B:43 , SER B:44 , TYR B:58 , ASN B:67 , ASN B:127 , LYS B:164 , VAL B:192 , ASN B:193 , GLY B:221 , ILE B:224 , THR B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , ORO B:901 , HOH B:902 , HOH B:904 , HOH B:990
BINDING SITE FOR RESIDUE FMN B 801
05
AC5
SOFTWARE
LYS A:43 , ASN A:67 , MET A:69 , GLY A:70 , LEU A:71 , ASN A:127 , CYS A:130 , PRO A:131 , ASN A:132 , ASN A:193 , SER A:194 , FMN A:800
BINDING SITE FOR RESIDUE ORO A 900
06
AC6
SOFTWARE
LYS B:43 , ASN B:67 , MET B:69 , GLY B:70 , LEU B:71 , ASN B:127 , CYS B:130 , PRO B:131 , ASN B:132 , ASN B:193 , SER B:194 , FMN B:801
BINDING SITE FOR RESIDUE ORO B 901
07
AC7
SOFTWARE
LYS A:213 , ASP A:214 , PHE A:216 , LEU B:171 , ALA B:234 , ARG B:238 , HOH B:959
BINDING SITE FOR RESIDUE GOL B 491
08
AC8
SOFTWARE
ALA A:9 , LYS A:10 , GLY A:94
BINDING SITE FOR RESIDUE GOL A 492
09
AC9
SOFTWARE
ALA A:234 , ARG A:238 , HOH A:1050 , LYS B:213 , ASP B:214 , PHE B:216
BINDING SITE FOR RESIDUE GOL A 493
10
BC1
SOFTWARE
ALA B:9 , LYS B:10 , GLU B:93 , GLY B:94 , HOH B:1114
BINDING SITE FOR RESIDUE GOL B 494
11
BC2
SOFTWARE
TYR A:141 , TYR A:168 , PHE A:169 , ASP A:170 , HIS A:173 , HOH A:901 , HOH A:902 , TYR B:141 , TYR B:168 , PHE B:169 , HIS B:173
BINDING SITE FOR RESIDUE GOL A 495
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:38-57,B:38-57,A:38-57,B:38-57)
2: DHODEHASE_2 (A:245-265,B:245-265,A:245-265,B:24...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRDA_LACLC
38-57
2
A:38-57
B:38-57
PYRDA_LACLM
38-57
2
A:38-57
B:38-57
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRDA_LACLC
245-265
2
A:245-265
B:245-265
PYRDA_LACLM
245-265
2
A:245-265
B:245-265
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ovda_ (A:)
1b: SCOP_d1ovdb_ (B:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Lactococcus lactis, isozyme A [TaxId: 1358]
(9)
1a
d1ovda_
A:
1b
d1ovdb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ovdA01 (A:1-52,A:71-194,A:221-311)
1b: CATH_1ovdB01 (B:1-52,B:71-194,B:221-311)
2a: CATH_1ovdA02 (A:53-70,A:195-220)
2b: CATH_1ovdB02 (B:53-70,B:195-220)
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(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Lactococcus lactis. Organism_taxid: 1358.
(3)
1a
1ovdA01
A:1-52,A:71-194,A:221-311
1b
1ovdB01
B:1-52,B:71-194,B:221-311
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Dihydroorotate Dehydrogenase A; chain A, domain 2
(22)
Homologous Superfamily
:
Dihydroorotate Dehydrogenase A, chain A, domain 2
(22)
Lactococcus lactis. Organism_taxid: 1358.
(3)
2a
1ovdA02
A:53-70,A:195-220
2b
1ovdB02
B:53-70,B:195-220
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DHO_dh_1ovdB01 (B:1-293)
1b: PFAM_DHO_dh_1ovdB02 (B:1-293)
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Organisms
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(
)
Clan
:
TIM_barrel
(694)
Family
:
DHO_dh
(22)
Lactococcus lactis subsp. cremoris (Streptococcus cremoris)
(4)
1a
DHO_dh-1ovdB01
B:1-293
1b
DHO_dh-1ovdB02
B:1-293
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Asymmetric Unit 1
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