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1OTO
Asym. Unit
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Asym.Unit (41 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN
Authors
:
M. Marino, J. Copp, S. Dramsi, T. Chapman, P. Van Der Geer, P. Cossart, P. Ghosh
Date
:
21 Mar 03 (Deposition) - 30 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Internalin, Inlb, Calcium-Binding, Invasion, Listeria, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marino, M. Banerjee, J. Copp, S. Dramsi, T. Chapman, P. Van Der Geer, P. Cossart, P. Ghosh
Characterization Of The Calcium-Binding Sites Of Listeria Monocytogenes Inlb
Biochem. Biophys. Res. Commun. V. 316 379 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:49 , ASP A:51 , HOH A:262 , HOH A:264 , HOH A:265 , HOH A:330 , HOH A:371
BINDING SITE FOR RESIDUE CA A 250
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
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1: LRR (A:99-120|A:121-142|A:143-164|A:165...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLB_LISMO
99-120
121-142
143-164
165-186
187-208
209-230
6
A:99-120
A:121-142
A:143-164
A:165-186
A:187-208
A:209-230
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1otoa_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Internalin LRR domain
(22)
Protein domain
:
Internalin B
(6)
Listeria monocytogenes [TaxId: 1639]
(6)
1a
d1otoa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1otoA00 (A:36-242)
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes. Organism_taxid: 1639.
(4)
1a
1otoA00
A:36-242
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_LRR_4_1otoA01 (A:164-206)
1b: PFAM_LRR_4_1otoA02 (A:164-206)
2a: PFAM_LRR_6_1otoA03 (A:207-233)
3a: PFAM_Internalin_N_1otoA04 (A:36-59)
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Clans
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)
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)
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)
Clan
:
LRR
(77)
Family
:
LRR_4
(28)
Listeria monocytogenes
(18)
1a
LRR_4-1otoA01
A:164-206
1b
LRR_4-1otoA02
A:164-206
Family
:
LRR_6
(24)
Listeria monocytogenes
(10)
2a
LRR_6-1otoA03
A:207-233
Clan
:
no clan defined [family: Internalin_N]
(18)
Family
:
Internalin_N
(18)
Listeria monocytogenes
(18)
3a
Internalin_N-1otoA04
A:36-59
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Asymmetric Unit 1
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Asym.Unit (41 KB)
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