PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1OSP
Asym. Unit
Info
Asym.Unit (151 KB)
Biol.Unit 1 (146 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF OUTER SURFACE PROTEIN A OF BORRELIA BURGDORFERI COMPLEXED WITH A MURINE MONOCLONAL ANTIBODY FAB
Authors
:
H. Li, C. L. Lawson
Date
:
23 Nov 96 (Deposition) - 21 Apr 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : H,L,O
Biol. Unit 1: H,L,O (1x)
Keywords
:
Complex (Immunoglobulin-Lipoprotein), Outer Surface Protein A Complexed With Fab184. 1, Borrelia Burgdorferi Strain B31, Complex (Immunoglobulin-Lipoprotein) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, J. J. Dunn, B. J. Luft, C. L. Lawson
Crystal Structure Of Lyme Disease Antigen Outer Surface Protein A Complexed With An Fab.
Proc. Natl. Acad. Sci. Usa V. 94 3584 1997
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_OSPA_BORBU_001 (P35S, chain O, )
02: VAR_OSPA_BORBU_002 (K39N, chain O, )
03: VAR_OSPA_BORBU_003 (D59H, chain O, )
04: VAR_OSPA_BORBU_004 (I90V, chain O, )
05: VAR_OSPA_BORBU_005 (V114A, chain O, )
06: VAR_OSPA_BORBU_006 (N127S, chain O, )
07: VAR_OSPA_BORBU_007 (R144K, chain O, )
08: VAR_OSPA_BORBU_008 (G149E, chain O, )
09: VAR_OSPA_BORBU_009 (G164S, chain O, )
10: VAR_OSPA_BORBU_010 (E196A, chain O, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_OSPA_BORBU_001
*
P
35
S
OSPA_BORBU
---
---
O
P
35
S
02
UniProt
VAR_OSPA_BORBU_002
*
K
39
N
OSPA_BORBU
---
---
O
K
39
N
03
UniProt
VAR_OSPA_BORBU_003
*
D
59
H
OSPA_BORBU
---
---
O
D
59
H
04
UniProt
VAR_OSPA_BORBU_004
*
I
90
V
OSPA_BORBU
---
---
O
I
90
V
05
UniProt
VAR_OSPA_BORBU_005
*
V
114
A
OSPA_BORBU
---
---
O
V
114
A
06
UniProt
VAR_OSPA_BORBU_006
*
N
127
S
OSPA_BORBU
---
---
O
N
127
S
07
UniProt
VAR_OSPA_BORBU_007
*
R
144
K
OSPA_BORBU
---
---
O
R
144
K
08
UniProt
VAR_OSPA_BORBU_008
*
G
149
E
OSPA_BORBU
---
---
O
G
149
E
09
UniProt
VAR_OSPA_BORBU_009
*
G
164
S
OSPA_BORBU
---
---
O
G
164
S
10
UniProt
VAR_OSPA_BORBU_010
*
E
196
A
OSPA_BORBU
---
---
O
E
196
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:192-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
1
L:192-198
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1osph2 (H:121-218)
2a: SCOP_d1ospl2 (L:108-214)
3a: SCOP_d1osph1 (H:1-120)
4a: SCOP_d1ospl1 (L:1-107)
5a: SCOP_d1ospo_ (O:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1osph2
H:121-218
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1ospl2
L:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]
(31)
3a
d1osph1
H:1-120
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1ospl1
L:1-107
Fold
:
open-sided beta-meander
(34)
Superfamily
:
Outer surface protein
(17)
Family
:
Outer surface protein
(17)
Protein domain
:
Outer surface protein A
(2)
Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
(2)
5a
d1ospo_
O:
[
close SCOP info
]
CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1ospO02 (O:128-273)
2a: CATH_1ospL02 (L:109-211)
2b: CATH_1ospH01 (H:1-120)
2c: CATH_1ospH02 (H:121-218)
2d: CATH_1ospL01 (L:1-108)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Outer Surface Protein A; domain 3
(152)
Homologous Superfamily
:
[code=3.90.930.1, no name defined]
(13)
House mouse (Mus musculus)
(2)
1a
1ospO02
O:128-273
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1ospL02
L:109-211
2b
1ospH01
H:1-120
2c
1ospH02
H:121-218
2d
1ospL01
L:1-108
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain H
Chain L
Chain O
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1OSP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
