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1OS9
Biol. Unit 9
Info
Asym.Unit (188 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 10 (62 KB)
Biol.Unit 2 (34 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (34 KB)
Biol.Unit 5 (34 KB)
Biol.Unit 6 (34 KB)
Biol.Unit 7 (91 KB)
Biol.Unit 8 (92 KB)
Biol.Unit 9 (63 KB)
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Title
:
BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12
Authors
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
Date
:
19 Mar 03 (Deposition) - 05 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: B,D,F (1x)
Biol. Unit 8: A,C,E (1x)
Biol. Unit 9: D,F (1x)
Biol. Unit 10: C,E (1x)
Keywords
:
Matrix Metalloproteinase, Hydroxamic Acid, Mmp12, Elastase, Complex (Elastase/Inhibitor), Metallo Elastase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
X-Ray Structures Of Binary And Ternary Enzyme-Product-Inhibitor Complexes Of Matrix Metalloproteinases
Angew. Chem. Int. Ed. Engl. V. 42 2673 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
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Sorry, no Info available
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Sites
(11, 11)
Info
All Sites
01: AC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC8 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC1 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , HOH B:997 , HOH F:946 , HOH F:1017
BINDING SITE FOR RESIDUE ZN B 906
02
BC7
SOFTWARE
HOH B:1054 , HIS D:218 , HIS D:222 , HIS D:228 , HOH D:1015
BINDING SITE FOR RESIDUE ZN D 916
03
BC8
SOFTWARE
HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196
BINDING SITE FOR RESIDUE ZN D 917
04
BC9
SOFTWARE
ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201
BINDING SITE FOR RESIDUE CA D 918
05
CC1
SOFTWARE
ASP D:158 , GLY D:190 , GLY D:192 , ASP D:194 , HOH D:926 , HOH D:946
BINDING SITE FOR RESIDUE CA D 919
06
CC2
SOFTWARE
ASP D:124 , GLU D:199 , GLU D:201 , HOH D:952 , HOH F:1007
BINDING SITE FOR RESIDUE CA D 920
07
CC8
SOFTWARE
HIS F:218 , HIS F:222 , HIS F:228 , HOH F:1048 , HOH F:1050 , HOH F:1054
BINDING SITE FOR RESIDUE ZN F 926
08
CC9
SOFTWARE
HIS F:168 , ASP F:170 , HIS F:183 , HIS F:196
BINDING SITE FOR RESIDUE ZN F 927
09
DC1
SOFTWARE
ASP F:175 , GLY F:176 , GLY F:178 , ILE F:180 , ASP F:198 , GLU F:201
BINDING SITE FOR RESIDUE CA F 928
10
DC2
SOFTWARE
ASP F:158 , GLY F:190 , GLY F:192 , ASP F:194 , HOH F:967
BINDING SITE FOR RESIDUE CA F 929
11
DC3
SOFTWARE
ASP F:124 , GLU F:199 , GLU F:201 , HOH F:941 , HOH F:1001
BINDING SITE FOR RESIDUE CA F 930
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (D:215-224,F:215-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP12_HUMAN
215-224
2
-
-
-
D:215-224
-
F:215-224
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1os9a_ (A:)
1b: SCOP_d1os9b_ (B:)
1c: SCOP_d1os9c_ (C:)
1d: SCOP_d1os9d_ (D:)
1e: SCOP_d1os9e_ (E:)
1f: SCOP_d1os9f_ (F:)
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Macrophage elastase (MMP-12)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1os9a_
A:
1b
d1os9b_
B:
1c
d1os9c_
C:
1d
d1os9d_
D:
1e
d1os9e_
E:
1f
d1os9f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1os9A00 (A:104-268)
1b: CATH_1os9C00 (C:104-268)
1c: CATH_1os9D00 (D:104-268)
1d: CATH_1os9E00 (E:104-268)
1e: CATH_1os9F00 (F:104-268)
1f: CATH_1os9B00 (B:104-268)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1os9A00
A:104-268
1b
1os9C00
C:104-268
1c
1os9D00
D:104-268
1d
1os9E00
E:104-268
1e
1os9F00
F:104-268
1f
1os9B00
B:104-268
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1os9F01 (F:108-263)
1b: PFAM_Peptidase_M10_1os9F02 (F:108-263)
1c: PFAM_Peptidase_M10_1os9F03 (F:108-263)
1d: PFAM_Peptidase_M10_1os9F04 (F:108-263)
1e: PFAM_Peptidase_M10_1os9F05 (F:108-263)
1f: PFAM_Peptidase_M10_1os9F06 (F:108-263)
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Clans
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Organisms
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)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1os9F01
F:108-263
1b
Peptidase_M10-1os9F02
F:108-263
1c
Peptidase_M10-1os9F03
F:108-263
1d
Peptidase_M10-1os9F04
F:108-263
1e
Peptidase_M10-1os9F05
F:108-263
1f
Peptidase_M10-1os9F06
F:108-263
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Asym.Unit (188 KB)
Header - Asym.Unit
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Biol.Unit 10 (62 KB)
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Biol.Unit 2 (34 KB)
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Biol.Unit 3 (34 KB)
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Biol.Unit 4 (34 KB)
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Biol.Unit 5 (34 KB)
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Biol.Unit 6 (34 KB)
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Biol.Unit 7 (91 KB)
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Biol.Unit 8 (92 KB)
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Biol.Unit 9 (63 KB)
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