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1OS9
Biol. Unit 8
Info
Asym.Unit (188 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 10 (62 KB)
Biol.Unit 2 (34 KB)
Biol.Unit 3 (34 KB)
Biol.Unit 4 (34 KB)
Biol.Unit 5 (34 KB)
Biol.Unit 6 (34 KB)
Biol.Unit 7 (91 KB)
Biol.Unit 8 (92 KB)
Biol.Unit 9 (63 KB)
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(1)
Title
:
BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12
Authors
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
Date
:
19 Mar 03 (Deposition) - 05 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: B,D,F (1x)
Biol. Unit 8: A,C,E (1x)
Biol. Unit 9: D,F (1x)
Biol. Unit 10: C,E (1x)
Keywords
:
Matrix Metalloproteinase, Hydroxamic Acid, Mmp12, Elastase, Complex (Elastase/Inhibitor), Metallo Elastase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
X-Ray Structures Of Binary And Ternary Enzyme-Product-Inhibitor Complexes Of Matrix Metalloproteinases
Angew. Chem. Int. Ed. Engl. V. 42 2673 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
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Label:
Sorry, no Info available
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , HOH A:988 , HOH A:1026 , HOH E:951
BINDING SITE FOR RESIDUE ZN A 901
02
AC2
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
BINDING SITE FOR RESIDUE ZN A 902
03
AC3
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
BINDING SITE FOR RESIDUE CA A 903
04
AC4
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:913 , HOH A:938
BINDING SITE FOR RESIDUE CA A 904
05
AC5
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:909 , HOH A:919
BINDING SITE FOR RESIDUE CA A 905
06
BC2
SOFTWARE
HOH A:1079 , HIS C:218 , HIS C:222 , HIS C:228 , HOH C:1058
BINDING SITE FOR RESIDUE ZN C 911
07
BC3
SOFTWARE
HIS C:168 , ASP C:170 , HIS C:183 , HIS C:196
BINDING SITE FOR RESIDUE ZN C 912
08
BC4
SOFTWARE
ASP C:175 , GLY C:176 , GLY C:178 , ILE C:180 , ASP C:198 , GLU C:201
BINDING SITE FOR RESIDUE CA C 913
09
BC5
SOFTWARE
ASP C:158 , GLY C:190 , GLY C:192 , ASP C:194 , HOH C:927 , HOH C:931
BINDING SITE FOR RESIDUE CA C 914
10
BC6
SOFTWARE
ASP C:124 , GLU C:199 , GLU C:201 , HOH C:947 , HOH E:931
BINDING SITE FOR RESIDUE CA C 915
11
CC3
SOFTWARE
HIS E:218 , HIS E:222 , HIS E:228 , HOH E:1006 , HOH E:1047
BINDING SITE FOR RESIDUE ZN E 921
12
CC4
SOFTWARE
HIS E:168 , ASP E:170 , HIS E:183 , HIS E:196
BINDING SITE FOR RESIDUE ZN E 922
13
CC5
SOFTWARE
ASP E:175 , GLY E:176 , GLY E:178 , ILE E:180 , ASP E:198 , GLU E:201
BINDING SITE FOR RESIDUE CA E 923
14
CC6
SOFTWARE
ASP E:158 , GLY E:190 , GLY E:192 , ASP E:194 , HOH E:989
BINDING SITE FOR RESIDUE CA E 924
15
CC7
SOFTWARE
ASP E:124 , GLU E:199 , GLU E:201 , HOH E:968 , HOH E:971
BINDING SITE FOR RESIDUE CA E 925
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:215-224,C:215-224,E:215-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP12_HUMAN
215-224
3
A:215-224
-
C:215-224
-
E:215-224
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1os9a_ (A:)
1b: SCOP_d1os9b_ (B:)
1c: SCOP_d1os9c_ (C:)
1d: SCOP_d1os9d_ (D:)
1e: SCOP_d1os9e_ (E:)
1f: SCOP_d1os9f_ (F:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Macrophage elastase (MMP-12)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1os9a_
A:
1b
d1os9b_
B:
1c
d1os9c_
C:
1d
d1os9d_
D:
1e
d1os9e_
E:
1f
d1os9f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1os9A00 (A:104-268)
1b: CATH_1os9C00 (C:104-268)
1c: CATH_1os9D00 (D:104-268)
1d: CATH_1os9E00 (E:104-268)
1e: CATH_1os9F00 (F:104-268)
1f: CATH_1os9B00 (B:104-268)
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1os9A00
A:104-268
1b
1os9C00
C:104-268
1c
1os9D00
D:104-268
1d
1os9E00
E:104-268
1e
1os9F00
F:104-268
1f
1os9B00
B:104-268
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1os9F01 (F:108-263)
1b: PFAM_Peptidase_M10_1os9F02 (F:108-263)
1c: PFAM_Peptidase_M10_1os9F03 (F:108-263)
1d: PFAM_Peptidase_M10_1os9F04 (F:108-263)
1e: PFAM_Peptidase_M10_1os9F05 (F:108-263)
1f: PFAM_Peptidase_M10_1os9F06 (F:108-263)
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Clans
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Organisms
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)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1os9F01
F:108-263
1b
Peptidase_M10-1os9F02
F:108-263
1c
Peptidase_M10-1os9F03
F:108-263
1d
Peptidase_M10-1os9F04
F:108-263
1e
Peptidase_M10-1os9F05
F:108-263
1f
Peptidase_M10-1os9F06
F:108-263
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