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1OS2
Biol. Unit 4
Info
Asym.Unit (178 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (32 KB)
Biol.Unit 6 (32 KB)
Biol.Unit 7 (86 KB)
Biol.Unit 8 (87 KB)
Biol.Unit 9 (59 KB)
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Title
:
TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12
Authors
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
Date
:
18 Mar 03 (Deposition) - 05 Aug 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: D,E,F (1x)
Biol. Unit 8: A,B,C (1x)
Biol. Unit 9: A,C (1x)
Keywords
:
Matrix Metalloproteinase, Hydroxamic Acid, Mmp12, Elastase, Complex (Elastase/Inhibitor), Metallo Elastase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bertini, V. Calderone, M. Fragai, C. Luchinat, S. Mangani, B. Terni
X-Ray Structures Of Binary And Ternary Enzyme-Product-Inhibitor Complexes Of Matrix Metalloproteinases
Angew. Chem. Int. Ed. Engl. V. 42 2673 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: AZIDE ION (AZIa)
2b: AZIDE ION (AZIb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
3k: CALCIUM ION (CAk)
3l: CALCIUM ION (CAl)
3m: CALCIUM ION (CAm)
3n: CALCIUM ION (CAn)
3o: CALCIUM ION (CAo)
3p: CALCIUM ION (CAp)
3q: CALCIUM ION (CAq)
3r: CALCIUM ION (CAr)
4a: ACETOHYDROXAMIC ACID (HAEa)
4b: ACETOHYDROXAMIC ACID (HAEb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
AZI
-1
Ligand/Ion
AZIDE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
4
HAE
1
Ligand/Ion
ACETOHYDROXAMIC ACID
5
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(7, 7)
Info
All Sites
1: BC9 (SOFTWARE)
2: CC1 (SOFTWARE)
3: CC2 (SOFTWARE)
4: CC3 (SOFTWARE)
5: CC4 (SOFTWARE)
6: DC1 (SOFTWARE)
7: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC9
SOFTWARE
HIS D:218 , HIS D:222 , HIS D:228 , HAE D:574
BINDING SITE FOR RESIDUE ZN D 569
2
CC1
SOFTWARE
HIS D:168 , ASP D:170 , HIS D:183 , HIS D:196
BINDING SITE FOR RESIDUE ZN D 570
3
CC2
SOFTWARE
ASP D:175 , GLY D:176 , GLY D:178 , ILE D:180 , ASP D:198 , GLU D:201
BINDING SITE FOR RESIDUE CA D 571
4
CC3
SOFTWARE
ASP D:158 , GLY D:190 , GLY D:192 , ASP D:194 , HOH D:598
BINDING SITE FOR RESIDUE CA D 572
5
CC4
SOFTWARE
ASP D:124 , GLU D:199 , GLU D:201
BINDING SITE FOR RESIDUE CA D 573
6
DC1
SOFTWARE
MET D:104 , ALA E:182 , HIS E:218 , GLU E:219 , HIS E:222 , HIS E:228 , ZN E:669 , HOH E:722
BINDING SITE FOR RESIDUE ACT E 674
7
DC9
SOFTWARE
ALA D:182 , HIS D:183 , HIS D:218 , GLU D:219 , HIS D:222 , HIS D:228 , ZN D:569 , HOH D:586 , HOH D:607 , MET F:104
BINDING SITE FOR RESIDUE HAE D 574
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (D:215-224)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP12_HUMAN
215-224
1
-
-
-
D:215-224
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1os2a_ (A:)
1b: SCOP_d1os2b_ (B:)
1c: SCOP_d1os2c_ (C:)
1d: SCOP_d1os2d_ (D:)
1e: SCOP_d1os2e_ (E:)
1f: SCOP_d1os2f_ (F:)
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Classes
(
)
(
)
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(
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Macrophage elastase (MMP-12)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1os2a_
A:
1b
d1os2b_
B:
1c
d1os2c_
C:
1d
d1os2d_
D:
1e
d1os2e_
E:
1f
d1os2f_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1os2A00 (A:104-268)
1b: CATH_1os2B00 (B:104-268)
1c: CATH_1os2C00 (C:104-268)
1d: CATH_1os2D00 (D:104-268)
1e: CATH_1os2E00 (E:104-268)
1f: CATH_1os2F00 (F:104-268)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1os2A00
A:104-268
1b
1os2B00
B:104-268
1c
1os2C00
C:104-268
1d
1os2D00
D:104-268
1e
1os2E00
E:104-268
1f
1os2F00
F:104-268
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1os2F01 (F:108-263)
1b: PFAM_Peptidase_M10_1os2F02 (F:108-263)
1c: PFAM_Peptidase_M10_1os2F03 (F:108-263)
1d: PFAM_Peptidase_M10_1os2F04 (F:108-263)
1e: PFAM_Peptidase_M10_1os2F05 (F:108-263)
1f: PFAM_Peptidase_M10_1os2F06 (F:108-263)
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Clans
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Families
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(
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Organisms
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)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1os2F01
F:108-263
1b
Peptidase_M10-1os2F02
F:108-263
1c
Peptidase_M10-1os2F03
F:108-263
1d
Peptidase_M10-1os2F04
F:108-263
1e
Peptidase_M10-1os2F05
F:108-263
1f
Peptidase_M10-1os2F06
F:108-263
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Hetero
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
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Biol.Unit 3 (33 KB)
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Biol.Unit 4 (32 KB)
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Biol.Unit 5 (32 KB)
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Biol.Unit 6 (32 KB)
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Biol.Unit 7 (86 KB)
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Biol.Unit 8 (87 KB)
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Biol.Unit 9 (59 KB)
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